G195445 (LOC106561395)


Basic Information

Item Value
gene id G195445
gene name LOC106561395
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83914363 ~ 83915156 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU221308
ACTTAATCTTATCCTAAAATGGCAAAGACATCAGAAATGTGTTTTAAACTACATCACAAACGTCACTGACCCAGATGTGAATCCAGACAGCCGCAGATCAATAGCTTGTAAACAGACATGATATCAGGGACCCCAGAGCCAACGACTCAAATTAATTCAGCGTGTTGCGCTGCTCCATTTCACTTGAGGCTGAGAAATGAGACGTGCTTGCCATTGGCTTCAGCCTATAAACATCTCCTCTGACGGCACAGACACAGTAAAACTGTGCAATTAAGCTGCCAAAACCAGGGCTCATTTAGTACAAGACGTTAAAATCAACCTCACTTCCACCCTATACAGCATATAGGACTGAACATATTGGTTCTGTTAAAAAAACTGAGGTCTCCTCAACCATTAGGACAAACAGCACTAGCGTTCACTACAgtaatggatggatgaatgaatgaatgaatggctgagtggatagatggatggagaaaTGGACACAAAGAACAACAAGCCTGTGGATCTCAATGTCTCACCTCATCGCCCATGTGGGGCTGGAACTGGAACTTGATGGGCGGGCAGAAGGCTGTGGGGTACAACTCCATGAAGCGCTGGCGGTCGCTGCGGGGGTCCAGACTGTCCACGGCGTTCTCGATGATGTCTAGGCCCTCGTGGCGACTTGTCTCCAGGTTGTACTCAGCCGATAGGTAGGTCCTCAGGGCACGGTTCAGGCTGGCGTGGTAGCCCAGATCACAGCACTGGTAGAGGGGAAGATGAGACTGTATTGGATCAGGATGCCCCGTTTACTG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221308 True 794 lncRNA 0.48 1 83914363 83915156

Neighbor

gene id symbol gene type direction distance location
LOC110497954 LOC106561396 coding downstream 101665 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 113766 83798504 ~ 83800597 (-)
LOC110497945 LOC106561398 coding downstream 122538 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 137027 83735711 ~ 83777336 (-)
LOC118944150 NA coding downstream 164692 83749617 ~ 83749671 (-)
tbxas1 LOC106561393 coding upstream 115560 84030716 ~ 84175738 (-)
LOC110502226 LOC106573176 coding upstream 641310 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 681777 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 1143591 85058747 ~ 85102785 (-)
LOC110502232 LOC106561380 coding upstream 1555783 85470939 ~ 85487796 (-)
G195375 NA non-coding downstream 106001 83807593 ~ 83808362 (-)
G195378 NA non-coding downstream 108954 83805099 ~ 83805409 (-)
G195377 NA non-coding downstream 109351 83804810 ~ 83805012 (-)
G194690 NA non-coding downstream 147494 83766655 ~ 83766869 (-)
G194684 NA non-coding downstream 156204 83757917 ~ 83758159 (-)
G195450 LOC103371712 non-coding upstream 10222 83925378 ~ 83926069 (-)
G195458 NA non-coding upstream 24830 83939986 ~ 83940416 (-)
G195462 NA non-coding upstream 30117 83945273 ~ 83945489 (-)
G195476 NA non-coding upstream 48980 83964136 ~ 83965047 (-)
G195520 NA non-coding upstream 112907 84028063 ~ 84028514 (-)
G195427 NA other downstream 9912 83881540 ~ 83904451 (-)
G194491 NA other downstream 298329 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 691219 83219964 ~ 83223972 (-)
G193755 NA other downstream 906387 83005830 ~ 83007976 (-)
G193745 NA other downstream 1001859 82901640 ~ 82912504 (-)
G195486 LOC106573171 other upstream 62809 83977965 ~ 83982167 (-)
G197498 slc25a18 other upstream 1921143 85831239 ~ 85843493 (-)
G197554 NA other upstream 2044689 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 2987880 86903036 ~ 86903956 (-)

Expression


Co-expression Network