G195486 (LOC106573171)


Basic Information

Item Value
gene id G195486
gene name LOC106573171
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 83977965 ~ 83982167 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU221355
ctgggatcttttatttcagctcataaaacatgggaccaacactttacatgttgcgtttatattgttgCTCAGTGTATTTCCTTTATTagacagaaaaacccttgaggaACAGCCCTCAGAGCTCTAAAAGTTGTTAAGATGTTACATGCCAAATATACAGTTCTATGCAATGTCACAATGGATAAGCAGTATCTTTATTATTAAAGATTGACTCCGCAAAATAACGGTGCCACGagcagcaccgcagatattgAGATGCAAGACTTCGCTCATTAATTAATTTGTCTCGCTTCCTACTCCACTTGCTCATAACACAGGGTCTGAAATAAGAATGCAACCGTACAGAACATTGAAAACGTTTTAGAGAAACTATGAACTAAGGCACTCATGTGTACATACTACAGATGTACATGGACACAAAGCAACAGTCAACAGGCAGGACTCCACTGCTAACTGTGTATAATGGCATATAGAAAGACGACACAGATTACAACAGGCTCATGTTCATTAGGACACTGTTGCAAAACGGAAAACAAaatgagtgtttcttattggGGTAGTCCCTTCCTGTTTGTTTTCTTCCCTTTGGTGTCTGATGAATACGACTGAAGTTTGGGTGGGACACCTGCAAATTCCGTGGCTCTGTTCTTTGGACCTTTGAATTTCTACAACCCTTGTTCTAAAAATCCCATTCAATTCTAACAAACAAAATCTTGAACAAAAATGATTACAAAATCCAGAAAGGGTTAGTAATCCAGAATTCAAATCATATTCACTTTTAATATACATGACATTTTGGCAACAGACAAAAATAAACCTGTTGCAGTTTGTATGCCAAGGAAAGCATTGCTTATTGCAAACTTGAGACAATGCTTTTTGGAGTCCTTGTTCTTTAACCAGATGCAAGCTTCCCACGCATGCACCCATCAGTCTCTTGTCTTCAGCTACACAGCACCTTAAAAAGAGACCCATAGAGGGCACTGTCACAGGGGAACATAGTTACAGTATGAGGAGGCCATTTCCCTTGTGATGGTTAGTTGTCACATGCacccaccagtggaggctgctgaggggaggatggcacataataatggccggaatggagtgaagggaatggtatcaaacacatggttttttatgtgtttgataccattccattcactagattatactccattccatacattattatgagccatcgttccctcagcagcctccacaatGACACCCACATCCTGTGACATGGTTTTCAGTGAACATCTGAGTATGCATTCCCCATGTCCACATGTGCTGCGTCTGCTCCTCTATACAGCTGGGATCTGGCACACAACAATCATTCAAAAGGGGGTATAACCTAAATGTACTAACAAAGTCCTGATGGAGAATCTAAACATCAGTCACATCTCCCCCACAGCGTAATGGACCAGCCCATCTCCCCATCCACAACACAAGGATTAGCCTACAGGTCAGAAGGGGCTATGGGGATGGGATATAAAGCATTCTGTCTTTGGGAGTTTACTGCCATGAGTTTAGGGAGTCTAAAAGAATGCTTACATtgcagaaggagggagagagagaaacaaacatccATGCTGTAAAAGTATATGTCGTCTTTGGACAGAGAAAGCCAGGCATTGTGTGTTGTTGTAAACCAAGCTCTGGTGTGTTTTCTATACTCTGTTTTATATGCAAAGCATTCTCAACCGCTCCCCTTGAATATAAAGACAAAAAGCCAACGAAGGTTCGACACAGGTCTTCAAGAGTATATAAACATTTTCACAGGATTTCCATAACGGgtaatatttcacagtggttGTATCCTCTTGTCTCCTTCCAGACTTCGATTAGAACTATGATGCTGCGATAAAATTAAAGCGATATAAAATCAACATGTAGGCAATCGTGTAACATCTCGTGACATCATTCTCAGAACTTTTGGGAGGTGCAGCCTAGTCCTTGACAAAAGTGTATCGAGTTCATTTGTACTCTTCTGTTGTGCACCAAATAAACATCTCATCATCTACTGTCCaattatatctacagtatatacagttgcaGCAAAATACATTGGCACCTTTGCACATTTCTTAAATAATTCCCTGTTTCTTCTCAAATAAGTAGaaacttaaaaaataaataaaccggTCTCCACTCCCTATTGGTTTTTCAACATGGCAGAACCAATTTTATGTTTGTGAACTTAAGTTTACAAtttaagaaaataaagaaaatgtcaTGGACAAAATGATTAGCACCCCAGAGCTTGAAGTTGGAGCTTGAAGTTGGAGCTTGAAGTTGGTTACATGGCCTTTGGCCAAGATAACTTCAGATAAATGCTTCTTGGAGCCATCAGTGAGCTTGCTGTACCTTTCAACTTGCAATTTGGCCCACTCTTCTGCAGCAAACTGCTATAATTGTTCAATGTTTGAGGGAGCCCTCCACCAACTGCTGCTTTCAGATTCCTCCATAGGTTATGGATGTGATTCTGATCTGAACTCTTCGCTGGCCACTCCAGAACAGTTCAGCGATTCTTCTTGAACCATTTCAGGGTGCTTTTGACGTGTGTTTTGAaatgttgtcctgctggaagacccacAACCTTAAAGAAAGACACCATTTTTGGACACTGGGTTGAACATTGAACTCCAAAATACCTTGATAATCTGCTGATTTCATGATTCATGATGTCTTGCACACATTCAAGGCCCCAGTACcagaggcagcaaagcaaccctACTGCACAAGTACTAGCTCCTGGGTGCCAATCATTTTTCCCAGGCCATTTGTCTTAAGTTTACAAATTTAATTTAGAAAATAAagtttataaaaataaaatatgttctGCAATGTTGAAAATTCAATAACAAAGGTTTTTTCCAATTGCAATTTATTTGAGAAGAAATAGggaattatttaagaaaagtgcaAGGGTGCTAATATATTTGGCCAAAACTGTATGTGAGAGTGCATCCTTATGATCACACACATATCTGGACTCTTGCCCTCCCTGCTTCAGTCTCAGCTATAAACATTAGCTACATCCAAACTTCCAACAGCTTTCAAATGGTGGTTTGAAATTTCACTATTGACAGCTTATATTTCTGAGTGGTACTCTAAATCTAAGCATTGTCCATCTAAGTGAGAAGCAAACCTTAGTCAGGTTCAACTGACACGGACTACATTTCCCATAGTTCCCCTGGCTGAGTAGTAAGCAAAACAGAATTGCAACGTGCACTATTTTGTTTCTTTAGCGTTCATTCTTTTGTAGTTCTCTAGTTTTTGTAAACTACCAGTCAAGTTTCTCTAACCTCAAAGGAAGCCTTGTGAATTGTTGTTCTGTATACAGTAATGATCAAGAAGAAAAAGTTGACTTATCTAGCAATGCTAGGCATTTCAGCAGATTCTACAGTATTTTCCACATGGATAGTTAGTCACACTGAAACATGCTCCTTTCCTTGTGGTAGTTCAGTCTGTCTAGCAGACCTGAGAATGTTCCTGTTTTCATTGTTAATAAATGTGGTTAACTTACTGGACACTGGTTAACTTCGACACAAGAAAACACATCTTTCTCACAAAGCAAATTACAACAGAATCATCAATGTCCAGGCAATGGACTGTTCTTATACTGTCTTATACAATATTGTTACTATTATTATCATTTATAGACAATGATAACATATTGCTACTATATGTAGTCAGAGACCCTCTCCCAGTTTCCTGTTGGTCCATGTTCCCATCCCAGAGTTCAAAGTTCACATGGTGCACGACTTGTCTAGGGGGTCTTGGGGAGGGTGTACAGGGGGAGGGTGAGCCGGGCCCGTCTTGGGCAGCACCAGGGGCTTGGGCCTCAGGGCAGGCGGCTTAAGCTGCACCCCCATACGGGGTACCACTACCGGCTTGAAGGTGCTCATGGTGTCGCTGGAAGAGCTGGTGCTGCGGCGCATCGGGGGCCCCCCGGCCTCGCCGGTCTGAGCCCTCAGAAGGATGTTGTGGAGGGGGCTGAGGGACTCGCTGGAGCTGGCTGGGGTGGGACCCCCGGTCGACTGCCTCTGCTCCAGGGTGTCCAGCACAACATCGGGAGCGTGCTTGGCCGAACTCTGCCTCTCCAGCTCACGCAGCTCGTTCAGCGCCGTGTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221355 True 4138 TUCP 0.37 2 83977965 83982167

Neighbor

gene id symbol gene type direction distance location
LOC110497954 LOC106561396 coding downstream 165267 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 177368 83798504 ~ 83800597 (-)
LOC110497945 LOC106561398 coding downstream 186140 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 200629 83735711 ~ 83777336 (-)
tbxas1 LOC106561393 coding upstream 48549 84030716 ~ 84175738 (-)
LOC110502226 LOC106573176 coding upstream 574299 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 614766 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 1076580 85058747 ~ 85102785 (-)
LOC110502232 LOC106561380 coding upstream 1488772 85470939 ~ 85487796 (-)
G195476 NA non-coding downstream 12918 83964136 ~ 83965047 (-)
G195462 NA non-coding downstream 32476 83945273 ~ 83945489 (-)
G195458 NA non-coding downstream 37549 83939986 ~ 83940416 (-)
G195450 LOC103371712 non-coding downstream 51896 83925378 ~ 83926069 (-)
G195445 LOC106561395 non-coding downstream 62809 83914363 ~ 83915156 (-)
G195520 NA non-coding upstream 45896 84028063 ~ 84028514 (-)
G195521 NA non-coding upstream 46625 84028792 ~ 84029106 (-)
G195566 NA non-coding upstream 103627 84085794 ~ 84094354 (-)
G195567 NA non-coding upstream 104389 84086556 ~ 84087684 (-)
G195568 NA non-coding upstream 108599 84090766 ~ 84092282 (-)
G195427 NA other downstream 73514 83881540 ~ 83904451 (-)
G194491 NA other downstream 361931 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 754821 83219964 ~ 83223972 (-)
G193755 NA other downstream 969989 83005830 ~ 83007976 (-)
G193745 NA other downstream 1065461 82901640 ~ 82912504 (-)
G197498 slc25a18 other upstream 1854132 85831239 ~ 85843493 (-)
G197554 NA other upstream 1977678 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 2920869 86903036 ~ 86903956 (-)
G198912 NA other upstream 3339972 87322139 ~ 87326469 (-)

Expression


Co-expression Network