G194806 (LOC106561393)


Basic Information

Item Value
gene id G194806
gene name LOC106561393
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84078288 ~ 84142920 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU220622
CTGGTGAAGAAGTCATCCACCTCAGCCTGCAGTTTGCTCTGACACTCTGGGTGTAGAGCCAGGAGGTAGCAGGTGAAGGCTAGCGTGTTGCTACTGGTCTCATACCCCGCCAAGAAGAACACAAATGCCTGGCCCACGATCTCATCATCCGACATCATCCTCTTCTGGGTCTGGACAGAGCGCCTGTTGGGTGACTCATGGCTGACGTCAACATTTTCTTGCtggtttgtgtgagtgtgtgtgggggccAGCTCATCTGCATGGTTGACCACGTCAAAGTGCTCCAGCGACACACACTCCTTGCTGCTCCGCGTTTCCAGCATCAGCTGTAGGAAGTCTCGCCGCCGCTCTTCAACTGgctgctcatctctctgtctgatgATCTTCTGAATGCAGTTGATGAAGAAGTTGTTCATCTCATCCCTCCTCTTGTTGGGGAGGAAACGGGCCAGAGGAATCAGGAATGGAAAAGCAATGAAGATGAACATGATGGGTGtgaagaaggagaaagagaagaactTCTGGGCGTGGTGGACAAACGGGTCATCTGGGTCCTTCTGAGAGTCCACCTGAGTGCCAAATGCAACGCTGGCAATCACGTCCATGGTGAAACAGCCAAAACACCTGTGAATGTCAAAGCTCTCTCCAGACTCAGCATGACAATTGAGGTTGGTGAGCAGGGTGTCAGTAGCAGTGTTGATCAGAGGACCCATCTCTTTCATCTTGGCTGCGCTGAAGGAGGGGGTGAGGATGCTGCGTACTCTCTTCCAGTGCTCGTTCCTCAGCATCAGCAGACAGTCACTCATGGGCTTAGTAGCGGCGCGGATTGTCATTCTGTTGGGGAAGGTGCTGAAGTCCTTCACCATGATCTGTCTGAGCATATCAGGGTCAGCTACCACCACCACGGGCCTCCTGCCTAGATAATATCCACATACTCTCCCATACTTGTGAATCAGGTCTGTATGAACACCGAAAAAGCCCTGACGAAATAGAAACAGGTTCCCAAAGAATGGGGATGGTTTGGGGTGCCTTATTCCACATTGAGCCAGGGACGAATAGGGGAACGTAGCATAcctagagagggagtgagagagagatagagagagagttggggtgtGAGTTAGTAACAGATAAAATGTACTGGGGGATATAGTAGTAATGCTACGGAGGTTACAGCATCTAATCTGGCAGATATGCTGCCAAAGAGGTacctcacaaacacacaacattATGACACTTGAAAGACTTATTTGCTCTGGGGAATGTAAAAATTCCACACTCCGACTC

Function

NR:

description
thromboxane-A synthase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU220622 True 1287 lncRNA 0.50 8 84078288 84142920

Neighbor

gene id symbol gene type direction distance location
LOC110497974 LOC106561394 coding upstream 52798 84001080 ~ 84025490 (+)
LOC110497968 LOC106561395 coding upstream 98463 83823583 ~ 83979825 (+)
LOC110497962 tmem5 coding upstream 259599 83814200 ~ 83818689 (+)
LOC110497928 LOC106561399 coding upstream 395879 83661951 ~ 83682409 (+)
LOC110502224 LOC106561400 coding upstream 466992 83498149 ~ 83611296 (+)
LOC110497999 LOC106561392 coding downstream 35152 84178072 ~ 84295747 (+)
LOC110498007 LOC106561389 coding downstream 153636 84296556 ~ 84382755 (+)
LOC110498015 LOC106561386 coding downstream 281451 84424371 ~ 84541661 (+)
LOC110498034 LOC106573178 coding downstream 867148 85010068 ~ 85054392 (+)
LOC110498064 NA coding downstream 1049094 85192014 ~ 85194828 (+)
G194804 NA non-coding upstream 45848 84030729 ~ 84032440 (+)
G194788 NA non-coding upstream 128836 83948071 ~ 83949452 (+)
G194777 NA non-coding upstream 153045 83919370 ~ 83925243 (+)
G194611 LOC106581772 non-coding upstream 305218 83772822 ~ 83773070 (+)
G194610 NA non-coding upstream 306102 83771971 ~ 83772186 (+)
G194947 NA non-coding downstream 38410 84181330 ~ 84183318 (+)
G195158 NA non-coding downstream 461032 84603952 ~ 84685605 (+)
G195247 NA non-coding downstream 583766 84726686 ~ 84727394 (+)
G195296 NA non-coding downstream 649647 84792567 ~ 84800126 (+)
G194395 NA other upstream 518690 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 953323 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 1423858 82652633 ~ 82654430 (+)
LOC110497686 NA other upstream 1656106 82417794 ~ 82426875 (+)
G193170 bhlh3 other upstream 1674453 82401113 ~ 82403835 (+)
G195155 NA other downstream 453490 84596410 ~ 84600324 (+)
G197069 NA other downstream 1992696 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 2894591 87037511 ~ 87039236 (+)
G198575 NA other downstream 3007282 87150202 ~ 87150490 (+)

Expression


Co-expression Network