G195615


Basic Information

Item Value
gene id G195615
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 84205396 ~ 84295740 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU221501
CCGTGACTTAACAGTTTAATGTAAATCCAAGACAAAGTGTGATTACATTTCTACACATATACAATATGCATATGTGAGCATACAAATTCTCATGAATAACTCGATTCACCTCGGAGACCGAAGAAATGATCAAAAGTAACAGTGAATAACAAGCTAGAACATAGTTCACCACAATGCCAGCCCCTTCACCCTACAGTTAGTAAAGAGGGCAATTAAAATAAGCATTTTCTTCTATGACCAAGTTGTCAATTAAAATCCTCCTGTAAATGTACAATGCTATCATTTCTTTTTTTGAAGCCTATTTTAAATTCACTCAATTTTTCTACAACGAAAATGATTAAGAGAAGCACACAACATCTTAATGGTAACACAAGCGCTTAGTAGCCAAGTACTCAACTTTTTAGGAGTTCAATTAATCATTCTTCTTATTCTCATTATTATATTTCTTTAAACATTCTATAAAGCCAGTAAAATATCCATTCTCACAACATACTCAATAATATTATTCTAAGGAATATGGTACATATAAAGCTATATCAACAGATATTAAGGAGACAACAAACGCACTTAAAAAAATCCCCAATAAATGTAAATGAGAGAGACAATTAACAAAGAAGTATACTAGGAAATACTGCAGCACATAATAGCCTGAACAACAATGAGATATCAACACCATTGAAAAAACATACAGCAATGGACACACAACAAGGACAGGGTTTGATGCTAACTTAGGGTTTGATACTTTGTACAAACATATCATTGTTTTTAACCCATTTCATTGTGAATGCAGTTGTTCAAGTACAAAATCAAAATCCGGATCAATATTACTGCAAaatgactacagtacagtatgacagttacaGCAGTTTACTGTTATATCCCTTGTCCCTCTGTCATCTATGGAGAAACAAGGTTTTATTGGGATTTATCAATGGGAATTCATTAGGCAATAACCCATCCGCTCAAGGACATTAGTACAATGCTCATTTGCGGTTTGAGCTGGCAAGAAATAGCTAAACAATACATTTTCTAAACCAAATTGTTTCAAAAATGTGTGCATAATAGGAAAATGAGACTTCTAGCATGTCTTCAGCAAGAGGGTAGAAAATATGTCATGTTGGCTCTTAAGTACATGTTTATAAAAACTGCCCAAATGACAACATTTGACGTATTCCATTAATGGGGGCATCAAACCCTTGACCCTCGGCCTGAATCCCCAAAGACAAAACCTAATGCAGGGGGTGATTCCCTTGACAAACATACAAATACAGACACATCAATACTCATACAGAAGGGCTTTAAAATGTGTTATTACTGGGTTACAGAGTTTCAGTGAtgcatataaaataaataatggtaAAACAAGTACTTTTCCTACCTCCCTGCTTCTTTGGGAGAGTGTACTTTGCAAAGCTCtcatgaaggggaggagaggttgTGTGATTATTCTATTCGGGTAAGGTGTTAAAATGATTCAAGTCACTTCAGAGGGGTTTGACCTGAGAAGACTAACTGGCAATGTGTGCCATTCCTTCAGGAATGTTTCACAATATTTCATACAAGGATCCAGAAAGAGCACTCGCAATCACACTCTGGGAAAAGTTGGAAGCTGAACACTTCTTGTGTAGCGCAAGTATTTCAAGAACAACAAAGTTGTAAAAATACCAGGCTTCACCAAAAGACCGCTTTACACAGCTCTCTTTAATTGAAACCACACCTTAAAGCTCTGAGGGTATGGTTTAGTTATTTGGAAGGCATTATTCTAACATTGAAATGGCTACTGTAGCACGGGAGAGATGATGTTCAAAGTAAACAAACTTCATTAGCACAAGAATACCACATTGTGGTAATTGTAAGGATCTACGTTGATGCTCACATTCTGAATCATATTTTCCATAAAACACATAACACGTTAAACAACGTGGTACGACGCTAAAAAATTTACACATTAAAATGTTATTTCATTCCAAATATAGCAAGTCCATTGAAACAAAATTGAGTGTAGGGTCAAAAGGGCTTCTCGTATATTGCTAAATATAGATTATACttgaaaatgttttaataaaatcaaataaataatatttGAAAACCCCATATTGGAAGAAACATTTTTCATTTTTCTATGAATTTATGTTGAGTCAAGTTGTTTTAGCTGGAATCAGACTTATTGCATCTTGCACGGCAACACATTTTTTTGTCATAataaatatatgccatttagcagacacttgtatccaaagcaacttacaatCATACATTTTTACGTATGCGTGGCCCCGGGAatctaacccacaaccctggcgttgcaagcgccaatGTAGGACTCAAATCTTCACTTAAACGAATGATCACTCAAGCAGAAATATCGAAAGCATTTCAGATGAAGCAGGTCACATATTATATTCATTTTGTGCTAGTGACCATTATTTTAAaggtattttttgttttttatttcactCTATAGGTCATTCCATGGCGCACTAACTTataacatgtttttgttttttacaaacGAATCTGCTTACAACATTAATAAAGCTAAAATATAACTTTAACAACGTAAAAAACACTTACATGTAAAACAATTCAGAGAGAAGTTTGAAATTCAACATTGGAACATTTAGGGGGTAACGAACATTAGGGGGTAATGGAACATTTAGGGGGTAACGAACATTAGGGGGTAATGGAACATTTAGGGGGTAACGAGTGACAGATCTAAAACATATTTTCTTCAAATCATAGATGTTTGAGAATGGTGGACTGCAATTGGCAGTCAAATAGCTTAAGATATTATGGCAACTTGAATcattcatgtatgtgtgtgttgtgccgATACTGGCGTTCTACTGTAGTATCTGTACACCTCACACACTAACATTTGCTTAAAACCCATCAATAGCCCTCAAAGCACACTCAACGTGCTGTAAAGGTACTTGTTTGGACCAGAAGTTATTGCCAGACCACATGGGGATTATTTGTGTTTGTACTGTACATCGTCAACATGTTGAATTTCTTTGGTGGGAAGAAAGAAAGGTCCAAAAATGACAAGTCATCAGATCAGAGCGCTATGGAGACTGTATGGTGTGCAGTGTGGATGCCAGATTCTCCCTATGGTGGAATGTTTCAGTAGTCTGCCTCTTTATGGAGGGGCCAACCACTCATGTGGAAAAGCATCTCCCGTATCTGTGTTCTTAGGCCCACAGGCCTTAtggaaatcaacaaaaaaagtaCCAACAAAGATACACCACAGAACAGAAAGAAAATGATGTAACCAGCAACCTATACATGCTACGCATCACATCTTTGACTGCCTGGAACCCAAGGCTTGCATGGTGGAGCCAGCTGGAGGGAGTGTGGTGGCCTATTGGTGAAGTaccaaaatgttgttgttttaggtTTAGTTTAGGGAGCAAACCTTGGTCTGACACACTCAAGTCTAAGCTACCTACCCATAAGGGCCCAAATGGATTATTGTCAACTTTATAACTTTATTATTTTCAACGGTGTCTGAACACTTTACACAGGTATACACCCCTCCTTATGAATACATAACATCACTGTACAGCAACTCCCAGTTACAAATCAACTTAGAAATGAGCCTAATAACAAATCACTGATAAAAACATCCACAAGAATTATTGCAACAATctgtaaaataacacaatacaGTTTATACTGTacctacatacatttaaaaagttCAATAATAacgtaaaaataaaataatcactTAAAATGCAAGTACTATGGCATGACATGAAGGGATAAGGGGGAAGGCTCTCACTAAAACCACAAGTATTTATGACGTGCCTACTTCATGAGGACACTACAACAAACATAGTAATCATATTTCATTGGCTACGAGAAATACAACTGATATTAAATTAAGCAGCAAACACATAGAAGCAATAGCCCAATCAGTTCTCTTACTATTAGGTATCCCTTTCTGGTGGTATGCTATCTGTGAACACATGATTCCGAAGACAACATGGATACAGTGTCAACAAATGAAGACTATTTCATAGTAAGCCCTTCCAGGTGTACGCAGTAGCATTTCTGTTCCGTTCACGTCTCTCTCTATGTGGAGAGGTGCTACACAACCCTCAGGGCAGAAATGACTAAATAACTTTCATTTATCTATACAAAACcactacaacaatacaacaacttGTATCAGAGTTAGGTGTGCATTCATGCAGTGCTCCTGTAACTCCTGCCCACCGTCACTGTTACTACCAACCTGCTCCATGCCAACATGCTATTCTTTTAGTCCCCTTTACATGAGGAATGCCACACTACCACTCTGCCATCCTCAGTTCCTACCCAGACCAACCAAATGCTTTCTACTAGTCCTCcactcacgcacgcactcactcactcactcactcacctccctcgCCCACTACTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU221501 True 4409 lncRNA 0.48 2 84205396 84295740

Neighbor

gene id symbol gene type direction distance location
tbxas1 LOC106561393 coding downstream 29658 84030716 ~ 84175738 (-)
LOC110497954 LOC106561396 coding downstream 392698 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 404799 83798504 ~ 83800597 (-)
LOC110497945 LOC106561398 coding downstream 413571 83779372 ~ 83791825 (-)
LOC110497937 LOC106561440 coding downstream 428060 83735711 ~ 83777336 (-)
LOC110502226 LOC106573176 coding upstream 260726 84556466 ~ 84585407 (-)
LOC110498022 LOC106561385 coding upstream 301193 84596433 ~ 84910878 (-)
LOC110498041 LOC106561383 coding upstream 763007 85058747 ~ 85102785 (-)
LOC110502232 LOC106561380 coding upstream 1175199 85470939 ~ 85487796 (-)
LOC110498116 LOC106561379 coding upstream 1242643 85538383 ~ 85545472 (-)
G195569 NA non-coding downstream 107129 84094785 ~ 84098267 (-)
G195566 NA non-coding downstream 111042 84085794 ~ 84094354 (-)
G195568 NA non-coding downstream 113114 84090766 ~ 84092282 (-)
G195567 NA non-coding downstream 117712 84086556 ~ 84087684 (-)
G195521 NA non-coding downstream 176290 84028792 ~ 84029106 (-)
G195734 NA non-coding upstream 85826 84381566 ~ 84419895 (-)
G195739 NA non-coding upstream 91824 84387564 ~ 84388420 (-)
G195999 NA non-coding upstream 497546 84793286 ~ 84801094 (-)
G196000 NA non-coding upstream 500154 84795894 ~ 84803467 (-)
G195486 LOC106573171 other downstream 223229 83977965 ~ 83982167 (-)
G195427 NA other downstream 300945 83881540 ~ 83904451 (-)
G194491 NA other downstream 589362 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 982252 83219964 ~ 83223972 (-)
G193755 NA other downstream 1197420 83005830 ~ 83007976 (-)
G197498 slc25a18 other upstream 1540559 85831239 ~ 85843493 (-)
G197554 NA other upstream 1664105 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 2607296 86903036 ~ 86903956 (-)
G198912 NA other upstream 3026399 87322139 ~ 87326469 (-)

Expression


Co-expression Network