G196275


Basic Information

Item Value
gene id G196275
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85050180 ~ 85061020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU222222
tcccagtcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgttggacagtggggatggtgtgttcagggtgatgagctgtgttgcttttatgccaaacataacgttttgcattgttgccaaaaagttcaatttatggtttaatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtgacaaactttaaacaacactttttatgggtatctttaagaaatggctttcttcttgcca
>TU222221
ctggactttgacttggccattctatcacctggatatgtttatttttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctctgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccaccaccatgttggacagtggggatggtgtgttcagggtgatgagctgtgttgcttttatgccaaacataacgttttgcattgttgccaaaaagttcaatttatggtttaatctgaccagagcaccttcttccacatgtttggtgtgtctcccaggtggcttgtggcaaactttaaacaacactttttatggatatctttaagaaatggctttcttcttgccactcttccataaaggccagatttgtgcaatatacgactgattgttgtcctatggacagagtctccc

Function

NR:

description
Tc1-like transporase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU222222 False 361 lncRNA 0.44 3 85050180 85060908
TU222221 True 540 lncRNA 0.42 2 85056090 85061020

Neighbor

gene id symbol gene type direction distance location
LOC110498022 LOC106561385 coding downstream 139302 84596433 ~ 84910878 (-)
LOC110502226 LOC106573176 coding downstream 464773 84556466 ~ 84585407 (-)
tbxas1 LOC106561393 coding downstream 874442 84030716 ~ 84175738 (-)
LOC110497954 LOC106561396 coding downstream 1237482 83809205 ~ 83812698 (-)
LOC118942895 NA coding downstream 1249583 83798504 ~ 83800597 (-)
LOC110502232 LOC106561380 coding upstream 409919 85470939 ~ 85487796 (-)
LOC110498116 LOC106561379 coding upstream 477363 85538383 ~ 85545472 (-)
LOC118936851 NA coding upstream 636400 85697420 ~ 85699798 (-)
LOC110502240 nup205 coding upstream 650519 85711539 ~ 85726478 (-)
dennd11 kiaa1147 coding upstream 673239 85734259 ~ 85748399 (-)
G196029 NA non-coding downstream 199726 84850156 ~ 84850454 (-)
G196000 NA non-coding downstream 246713 84795894 ~ 84803467 (-)
G195999 NA non-coding downstream 249086 84793286 ~ 84801094 (-)
G195739 NA non-coding downstream 661760 84387564 ~ 84388420 (-)
G196310 NA non-coding upstream 46902 85107922 ~ 85108548 (-)
G196325 NA non-coding upstream 56639 85117659 ~ 85117883 (-)
G196594 NA non-coding upstream 133877 85194897 ~ 85198587 (-)
G196643 NA non-coding upstream 201532 85262552 ~ 85263420 (-)
G196725 NA non-coding upstream 328943 85389963 ~ 85424322 (-)
G195486 LOC106573171 other downstream 1068013 83977965 ~ 83982167 (-)
G195427 NA other downstream 1145729 83881540 ~ 83904451 (-)
G194491 NA other downstream 1434146 83615566 ~ 83616034 (-)
LOC110502187 NA other downstream 1827036 83219964 ~ 83223972 (-)
G197498 slc25a18 other upstream 775279 85831239 ~ 85843493 (-)
G197554 NA other upstream 898825 85959845 ~ 85963665 (-)
G198342 LOC100194703 other upstream 1842016 86903036 ~ 86903956 (-)
G198912 NA other upstream 2261119 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 4545817 89606837 ~ 89609890 (-)

Expression


Co-expression Network