G197037


Basic Information

Item Value
gene id G197037
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 85959802 ~ 85963597 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU223030
gactccggcagcgctgtagaggcggaaggctctggcagcgctaaacaggcgggagactccggcagcgctgtagaggaggaaggctctgacagagctagataggcgggagactccggcagcgctggagaggaggaaggctctgacagcgctggacaggcaaggcgcactgtaggcctgatgcgtggtgctggcactggtggtactgggccgagaacacgcacaggaagcctggtgcggggagctgctaccggagggctggtgtgtggaggtggcacaggatggaccggaccgtgaaggtgTACTGGAGagcttgagagcagggctggcacaggacgtgcaaggctagggaggtgcacaggaggcctagtgcgtgaggctggcacaatcttcaccagccgactaacacgcacctcaggacaagtatggagcgctgacccaggtgccatcaaatccccgacacgctccatCGGGCGAATATCGTACctaaagcaccaacacagcaactccctcataactctctcctccaatttccccattaactccttcacagtctctgcttcgctcacctccaacaccggctctgattctggtctcctccttggctcctcacgataaacagggggagttggctctggtctgaaccctgactctgccacactctccctgagccccccccccccccaagaaatgtttggggctgactctcgggcctccgtccgcgccgccgtgcttgcgtcgcaaactccattctccgataaccttccgcgcactgctccatcgaatcccaggcgggctccggcactctctctgggtcgaccgcccacctgtctatttctTCCCAAGTCCTTTCCTCCTTTcgctgctgttgcccgttac
>TU223032
taaagcaccaacacagcaactccctcataactctctcctccaatttccccattaactccttcacagtctctgcttcgctcacctccaacaccggctctgattctggtctcctccttggctcctcacgataaacagggggagttggctctggtctgaaccctgactctgccacactctccctgagcccccccccccaagaaatgtttggggctgactctcgggcctccgtccgcgccgccgtgcttgcgtcgcaaactccattctccgataaccttccgcgcactgctccatcgaatcccaggcgggctccggcactctctctgggtcgaccgcccacctgtctatttctTCCCAAGTCCTTTCCTCCTTTcgctgctgttgcccgttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223030 False 876 lncRNA 0.40 2 85959802 85963597
TU223032 True 389 lncRNA 0.40 2 85960286 85963597

Neighbor

gene id symbol gene type direction distance location
LOC110498230 cecr1 coding upstream 44344 85908697 ~ 85915458 (+)
LOC110498211 LOC106561369 coding upstream 58908 85845868 ~ 85900894 (+)
LOC110498193 LOC106561370 coding upstream 123687 85831193 ~ 85836115 (+)
bida LOC106561376 coding upstream 194771 85755625 ~ 85765031 (+)
wee2 LOC106561372 coding upstream 205591 85748761 ~ 85754211 (+)
LOC110498298 LOC106561360 coding downstream 53290 86016887 ~ 86036771 (+)
LOC110498335 LOC106561359 coding downstream 79203 86042800 ~ 86111227 (+)
LOC110498346 LOC106573196 coding downstream 151028 86114625 ~ 86121138 (+)
LOC110498357 LOC106561358 coding downstream 161161 86124758 ~ 86131467 (+)
LOC110498407 LOC106561353 coding downstream 460113 86423710 ~ 86477838 (+)
G197031 LOC106561367 non-coding upstream 8858 85950419 ~ 85950944 (+)
G196990 NA non-coding upstream 116543 85842017 ~ 85843259 (+)
G196905 NA non-coding upstream 181864 85775488 ~ 85777938 (+)
G196877 NA non-coding upstream 356312 85602573 ~ 85603490 (+)
G196816 NA non-coding upstream 457578 85501891 ~ 85502224 (+)
G197043 NA non-coding downstream 5216 85968813 ~ 85969223 (+)
G197116 NA non-coding downstream 108928 86072525 ~ 86073581 (+)
G197129 NA non-coding downstream 126345 86089942 ~ 86090821 (+)
G197072 NA non-coding downstream 149403 86113000 ~ 86113167 (+)
LOC110498034 LOC106573178 other upstream 939768 85010068 ~ 85054392 (+)
G195155 NA other upstream 1359478 84596410 ~ 84600324 (+)
G194395 NA other upstream 2400204 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2834837 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 3305372 82652633 ~ 82654430 (+)
G197069 NA other downstream 172019 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 1073914 87037511 ~ 87039236 (+)
G198575 NA other downstream 1186605 87150202 ~ 87150490 (+)
G198784 NA other downstream 1530026 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 1572339 87535936 ~ 87536928 (+)

Expression


Co-expression Network