G197552 (LOC106561360)


Basic Information

Item Value
gene id G197552
gene name LOC106561360
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86026890 ~ 86043305 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU223613
AATATCAATTCACATAAATCAAAGTAGCCTATATGGAAACTAAGCCGGTATAAAACATCAGGACGTCAAAAGCCACAACGTCGTGATCATTTCGACTGGAACATCATTATCACATTGATTTAGGTTCGATAGACAGACCATAACCGCGAGAGGACTTCAAAtcattatgtttttcaaaagcaAACTCATGCAGTGGGCGCATTTAACATTGTATAAAGCGGAAGTTATACATTGAATACGATTTACATATTAGTAGTCCAGTTATAGCGAGCTGCGGCGCTACATTTGGAAACAAGCGGAAAGTATGTGGCACACCAAAAAAATACAAGAACGGCAAATTATTAGATCGAATAGCGAAATACTTTCGGCCTACCTTTTCTACAAAACTCCCGTAAATCTATGCAGCAACTTGTCCACTATTCTTGATGTTCAGTCGTTGCCCAACTTTTAGGAACTTGGGACTCTGCTGTGACGTTCAGGGATACTATGGAGCGAGGAGAGAGATTATGGGAGGATGGAGGCGACTGTTTTCGGGAGGAATGCTGAGACGCTCAATGGAGTTGACCCTGTTGTCCACCAGCAATACCAGGCCACACAGGGACgaggagtagagagacagagcagtCTGCAGCCGCCTCAGCTTGGTCCCTCTGCTGCCATGGCGACGGTGCTTACAGAAGTCCAGTACGTCCGCCCGCACCAGTCGCAGGTTGTGCATTGTCTTCAGCTGTGCACCTAAGTGGATGGTGAAGCTCTCCTCCAGCTGTCGCTGCTCCTCATACAGCCTGACCCCAGGCTCAGACTCCTCTGTCAGCTGGCTCGGCTGCACCTTGATCTCCTCAttaatAGTGCTGTTATTGGGGTTCTGCATGTCCTGGTGCAGTTTGATCACCCACTCCTGATACTCCTGCTTCTGAATATGAGTCACCTGTTTCAGTTCATTGGCCCACTTGTTCTCCAGCACCTGCTGGGCATCGAAGTGTTGAGATGCAACTGCATTTACATCCTGGTCAGTCATGGTCTTTCCCAGTTCTTGCATGACTTTGTCCATCTCTGTTGCCTGCCTCTCTTGTAACTTCTTCAGCTCCATGTCTCGCTCACTGATGAGCTCTGAGACACTGACAAAGTAGTTGTGTTCCAGGTTGAGCAGAGTGTCAGAGGCCGGGGAGTGGATGAGCTCGTGGTAAACATCTGCAAAGTCCTCATCCCAGCTGGGCTCCTCAGGACGAGCATGTTCCAGTGTAGTC

Function

NR:

description
protein C12orf4 homolog isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223613 True 1247 lncRNA 0.49 6 86026890 86043305

Neighbor

gene id symbol gene type direction distance location
LOC110498321 LOC106561361 coding downstream 9326 86012158 ~ 86017564 (-)
dyrk4 LOC106561362 coding downstream 52726 85955508 ~ 85974164 (-)
LOC110498273 LOC106561367 coding downstream 73991 85948772 ~ 85952899 (-)
LOC110498255 LOC106561363 coding downstream 78432 85942497 ~ 85948458 (-)
LOC110498224 LOC106561365 coding downstream 100058 85920854 ~ 85926832 (-)
tigara LOC106561357 coding upstream 93386 86134395 ~ 86139827 (-)
ccnd2a LOC106561356 coding upstream 98416 86141721 ~ 86420584 (-)
LOC118936857 NA coding upstream 358064 86401369 ~ 86404155 (-)
setd6 setd6 coding upstream 476717 86520022 ~ 86526770 (-)
LOC110498617 LOC106561447 coding upstream 614709 86658014 ~ 86676250 (-)
G197498 slc25a18 non-coding downstream 190203 85831239 ~ 85843493 (-)
G197441 NA non-coding downstream 272672 85752441 ~ 85754218 (-)
G197424 NA non-coding downstream 281486 85664173 ~ 85745404 (-)
G197394 NA non-coding downstream 342364 85640538 ~ 85684526 (-)
G197328 NA non-coding downstream 543265 85483027 ~ 85483625 (-)
G197613 NA non-coding upstream 30968 86074273 ~ 86074839 (-)
G197636 LOC106561359 non-coding upstream 65758 86109063 ~ 86109468 (-)
G197637 NA non-coding upstream 66547 86109852 ~ 86110146 (-)
G197638 NA non-coding upstream 66843 86110148 ~ 86110650 (-)
G197639 NA non-coding upstream 67568 86110873 ~ 86111077 (-)
G197554 NA other downstream 63225 85959845 ~ 85963665 (-)
LOC110498022 LOC106561385 other downstream 1387134 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2044723 83977965 ~ 83982167 (-)
G195427 NA other downstream 2122439 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 859731 86903036 ~ 86903956 (-)
G198912 NA other upstream 1278834 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3563532 89606837 ~ 89609890 (-)
G202279 NA other upstream 4334252 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 5545907 91589212 ~ 91591049 (-)

Expression


Co-expression Network