G197116


Basic Information

Item Value
gene id G197116
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86072525 ~ 86073581 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU223117
CCATTTTGTGCTATTTGCATGCCAAGAGGGATGAGTCCCCTCCCAGATCTCTTACTATCTCcaatcagaggggttgggttaaatgcggaaaacacatttcagttgaattcattcagttgtacaacggaCAAGGAATCCCCCTTTCTCCTTTCAACAGTTTCAAAGGACTGGGAGAGGTGttgaccctcctctcctcacttccagATCAGTTATCCCGAGCGTGCATTCCTCTCCTCTGGGTCCACCTGATAAGTGTCAGTGTGTGAATCCcgtgtctgtccatctgtctgtcagaTAGGCTAACCAGCGCTGCTTCCCCGGGAGGGTCGTGATAAGATAATTGAAATGTTTAAAGGTAATGATTAAATAATTCTACCCTGAAACGTAACCATTACGGAGTATAGTTTATGTAGCATGTATAAGGAATAATTAAAGTATTAAACATAAGTCCAATTAGGttggactgggagagagagaaatgtgtgtgtgcctAAGAAAATACAGAAGAACAGTTAGGttggactgggagagagagaaatgtgtgtgtgcctAAGAAAATACCGAAGAACCATTCAACTGTTTGAACCGACCTGGCAGGAACTCTGAGGAACCTATGAGAGCATAGGGAGTACTTCTCAAGGTTTCCCTAATCACGGGGGAATGGAACTGTCGGCTGGGCAGTGATACATAGTGGTGAGAACTATAGAGATAAAactcacctactgtttgtgtggaagtatgtgcgtaggatacctactgtttgtgtggaagtatgcgcgtaggatacctactgtttgtgtggaagtatgtgcgtaggatacctactgtttgtgtggaagtatgtgcgtaggatacctactgtttgtgtggatgtatgtgcgtaggatacctactgtttgtgtggaagtatgcgcgtaggatacctactgtttgtgtggatgtatgtgcgtaggatatctactgtttgtgtggatgtatgtgcgcaggat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223117 True 989 lncRNA 0.41 2 86072525 86073581

Neighbor

gene id symbol gene type direction distance location
LOC110498298 LOC106561360 coding upstream 35754 86016887 ~ 86036771 (+)
LOC110498230 cecr1 coding upstream 157067 85908697 ~ 85915458 (+)
LOC110498211 LOC106561369 coding upstream 171631 85845868 ~ 85900894 (+)
LOC110498193 LOC106561370 coding upstream 236410 85831193 ~ 85836115 (+)
bida LOC106561376 coding upstream 307494 85755625 ~ 85765031 (+)
LOC110498346 LOC106573196 coding downstream 41044 86114625 ~ 86121138 (+)
LOC110498357 LOC106561358 coding downstream 51177 86124758 ~ 86131467 (+)
LOC110498407 LOC106561353 coding downstream 350129 86423710 ~ 86477838 (+)
LOC110498438 LOC106561350 coding downstream 407694 86481275 ~ 86520602 (+)
LOC110498585 LOC106561449 coding downstream 481894 86555475 ~ 86564249 (+)
G197043 NA non-coding upstream 103302 85968813 ~ 85969223 (+)
G197037 NA non-coding upstream 108928 85959802 ~ 85963597 (+)
G197036 NA non-coding upstream 111050 85958166 ~ 85961475 (+)
G197031 LOC106561367 non-coding upstream 121581 85950419 ~ 85950944 (+)
G196990 NA non-coding upstream 229266 85842017 ~ 85843259 (+)
G197129 NA non-coding downstream 16361 86089942 ~ 86090821 (+)
G197072 NA non-coding downstream 39419 86113000 ~ 86113167 (+)
G197070 NA non-coding downstream 61520 86135101 ~ 86135427 (+)
G197065 NA non-coding downstream 67879 86141460 ~ 86146225 (+)
LOC110498034 LOC106573178 other upstream 1052491 85010068 ~ 85054392 (+)
G195155 NA other upstream 1472201 84596410 ~ 84600324 (+)
G194395 NA other upstream 2512927 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 2947560 83119221 ~ 83124965 (+)
G193339 LOC106561425 other upstream 3418095 82652633 ~ 82654430 (+)
G197069 NA other downstream 62035 86135616 ~ 86136608 (+)
G198417 LOC106561459 other downstream 963930 87037511 ~ 87039236 (+)
G198575 NA other downstream 1076621 87150202 ~ 87150490 (+)
G198784 NA other downstream 1420042 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 1462355 87535936 ~ 87536928 (+)

Expression


Co-expression Network