XLOC_002139


Basic Information

Item Value
gene id XLOC_002139
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 24404690 ~ 24412025 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005895
GAAAAGTACAGGTAGGAAATACAGGGGGGGTCACTTTCAGACGGTCCTTCCCTCAACTTCCACATGATCGATTAGAGACTCCTTGGTCACTTGGTTCATCCCTGATGGTCCGTAATCCCACTGAACCTTCTCAGCAGCAATGAAATACTTCCTGATCTTCCCACTGAGAGGAGCCGTGGAGCTCGCCTCATCACTGCAGGACGACACATTGAACAGTGCCTGCATACCAGCTATTGAAGACAATAAGCAAAAGGAATCATGTTTGCAGTGGCAAAAGTGGCAGAAAACAGACTCATGACATCCACACGGTGCCCGCGGTCCAGAAGTGTGTGCCCGTGGAAATAAACTGAGTGAATGTCGATCTCATTGCCCATGCCAAAGAGATGCAGAGCAACTGTGCGGTTTTGACAAAACTCAATCCCCGGTAGGTTTCCATACACATATCCATTAATGGCTGAAAAATGAAGAACATTTACTTAATGACTTAAACTGCTATCTTGGTTTATGAATTTTTCAATGaactttttaaatgaacaaagaactgctcttttattttatttatttttattttttaaaaacattttaattttatagaTTGAGTTTTGATATACGTACCGTGCATCAAATTGGATTCTTGGAAGTCTTCACTTGCAGGATCCACACCATCTGGGTCGGAGCAGAAGCTCTGGATGTTCTCTTTTAGATACCAGCTGATGTTCTCATCCACCACACTGAACATGAGGATGAGATCCTGGTCCACATCCTCACGATGAGCGTGGTGCTGATCGGAAGTGGACGTCTCACACAGGGTGAGAAGAGCTCCAATAAGGCCAGAGGAGATGTCCTGTGAAGCACTGACGTGTGAATGGTAGGCCCATGTCAGGCAGTTTGGGTCATCCTTCTGAGGGGCAGATTCTGCTTTCACAATCCAGGTGTAGGTGTAGTTTCCCCCTGGAGGAACACCGTCATCTTGCTTCAGACTGTCTGAGGTTCCGTCTGGATACAACGCACCTGGTAGAAATGGAAATGATCAGCAAGAAGGAGTGATTGAGACAGAAAGAGGCTTTACCTTCTGAGTCTTTGGCATAGAAGACGCCATGTGGATGCATGGAGTAACGTCTGGAGCCAAAGTTCTTCATGTGCACTATGATAACATCCTGCTCCTCAGCCCTCATGATGGGCCCCAGGTAACCCAGCCAGGGGGGTTTGGGGACCTCCTGAGAGTAAGAAGAATCTGTGTACTGCCTGTAAATTGCCTTTTTATACACACTGCCAATCCGCCGAGCCCCACGTTGCAGAAATACTGATGCCTGCCTGAGGAAAAAGAAAGTAAGTAGAGTTTTCTGAAGAATTATTAGCTTAAACGGGTAATTTTCTTCCATAATTGAGTGCATTTGATAAATACACTCAATATATTGAATGCATTCAATTTAGGCAAATATTTGGAGGAACATAAATAGACATTGAATTATagcttaatattatatataaaaaaatgagtagctaacatttaataaaaatgtattatgttaTGTGTTACACTCTttatttgtaatatgtaatatgaaatcttttttttttttctataatatttaattaatgttttagcgtgaatattttttcttgttcaaattaagcatacaaggctctgctaaatattttgtccagtgcagctgttaattttatgtaattaatatgaattatatgCATTATATGAATAATTGAATACCATTGTAATTATTGAATACCATTgttaatgttatattatatgcTCCATGAAatagtatttgcccttcaaggctttaTATCAAAGAAGCAAGggagtttaataaacactaaaaaatgtttcattggttgactctgattttgtgtttttttctggtCTTTCCCACTGTCAATGGAGCAAAGTGGCGAAATGACAAAGAtagctgatcctgattggcccTCGTCTGTGCATTTGAAATGCtaattggctcacagaaagaaccttatagagccaagctagagtttgactttgtagataaaaccttttttgtttgttttttaaataaaaactcttaaaatgcaaacaacttataaaaaaatcacataatgtaaatatgttgtcattcattaaaattatgtaaataactCACAAAAAtgacagatagaaccttataattcttaaGTGACAATACTGTActatacataaaat
>TCONS_00005896
CTTCCAGGATCGATTAGAGACTCCTTGGTCACTTGGTTCATCCCTGATGGTCCGTAATCCCACTGAACCTTCTCAGCAGCAATGAAATACTTCCTGATCTTCCCACTGAGAGGAGCCGTGGAGCTCGCCTCATCACTGCAGGACGACACATTGAACAGTGCCTGCATACCAGCTATTGAAGACAATAAGCAAAAGATGATCATTGACCTGGCAGTTTAACAGCCACGTCCCTATTGTGGCAGGAATCATGTTTGCAGTGGCAAAAGTGGCAGAAAACAGACTCATGACATCCACACGGTGCCCGCGGTCCAGAAGTGTGTGCCCGTGGAAATAAACTGAGTGAATGTCGATCTCATTGCCCATGCCAAAGAGATGCAGAGCAACTGTGCGGTTTTGACAAAACTCAATCCCCGGTAGGTTTCCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005895 False 2194 lncRNA 0.38 5 24404690 24412025
TCONS_00005896 True 425 lncRNA 0.49 2 24406544 24407548

Neighbor

gene id symbol gene type direction distance location
XLOC_002138 CT573163.1 coding upstream 6019 24397098 ~ 24398671 (+)
XLOC_002136 NA coding upstream 29530 24316853 ~ 24375160 (+)
XLOC_002137 CU467963.3 coding upstream 50824 24353750 ~ 24353866 (+)
XLOC_002133 gbe1a coding upstream 106648 24048663 ~ 24298042 (+)
XLOC_002135 NA coding upstream 307380 24097055 ~ 24097310 (+)
XLOC_002140 paxbp1 coding downstream 9992 24422017 ~ 24493323 (+)
XLOC_002141 mtus2a coding downstream 92267 24504292 ~ 24622317 (+)
XLOC_002142 slc46a3 coding downstream 215658 24627683 ~ 24641400 (+)
XLOC_002143 vps36 coding downstream 231054 24643079 ~ 24683770 (+)
XLOC_002144 NA coding downstream 238838 24650863 ~ 24655184 (+)
XLOC_002134 NA non-coding upstream 308220 24096239 ~ 24096470 (+)
XLOC_002147 NA non-coding downstream 403279 24815304 ~ 24819159 (+)
XLOC_002148 NA non-coding downstream 422734 24834759 ~ 24835445 (+)
XLOC_002154 NA non-coding downstream 1275609 25687634 ~ 25702407 (+)
XLOC_002156 NA non-coding downstream 1350178 25762203 ~ 25765571 (+)

Expression


Co-expression Network