G197655


Basic Information

Item Value
gene id G197655
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86412664 ~ 86458968 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU223734
gtacaaaaccaaaagtaaaagatgcaaaaacgaaacttaagaatgggaagcatagaataacgcacatagaacagatatacAGCTTCTTAGACTGACGTTCAAtgagaaagaaatgtgtgttgtaGATCTTTCAATGTGAAAAAAGTAACATATTGCAGTGGTGCAAAGAGCTTTCAGGAGTCCCAGTGCCATGAAGAGTAACCAATTACTGGGAGGTCTGTGCTTCTGCCAGTGACAAATAACATTGTGTTCAGACCTACAGAACAGTGCACAGAATGATTTAGTCTCTGACAGTAGTGAGATCAGAGTTTGGAGCATGTTTATCCCAATGGAAAAGCATACCATTAACCCTTTCTAGTGTACAGTTCCACTGCCACACTGACCATGGgcattacatttaaaaaaccATGAGACAATGATTCCCATGCTAAGAGGCACAATGGCCATGCTGCACTTTCTCAGttctgcccacaaattttctatgggattgaggtcagggctttgtgatggccactccaataccttgactttgttgtcctttagctattttgccacaactttggacattgttcttctggaagacccaattgtgatcaagctttaacttcccgactgatgtcttgatgttgcttcattatatccacataattttcctccctcatgatgccgtctattttatgaagtgcaccagtcccttctgcagcaaaacacccccacaacatgatgctgccacacccgtgcttcacggttgggatggtgttcttcggcttgcaagcctccccctttttcctccaaacatactgatggtcattatggcccaacagttctatttttgtatcatcagaccagaggacagttctccaaaaagtacaatctttgtccccatgtgcagttgcaaaccgtagtcttcttccttgctgagcggcctttcaggttatgtcgatataggactcgtttcactgtggatatagatacttttgtacccgtttcctccagcatcttcacaaggtcctttgctgttgttctggggttgatttgcacttttcacaccaaagaacgttcatctctaggagacagaacgcgtctccttcctgagcggtatgccgGCTGCGTGttgccatggtgtttatacttgcatactattgtttgtacagttgaatgtggtaccttctggtatttggaaattgctcccaaggatgagccagacttgtggaggtctacaatgttttttctgaggtcttggctgatttcttttgattttcccatgatgtcaagcaatgaggcactgagtttgaatgtagtcCTTGAAAAACATcaacaagtacacctccaattgactcaaatgatgtcaattagcctatccaaagcttctaaagccatgacatcattttctggaattttccaagctgtttaaaggcacagtcaaattagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaaaattacttgtgtcatgcacaaagtagatgtcctaaccgtcttgccaaaactatagtttgttaacaagaaatttgtaaaattgttgaaaaacaagttttaatgactccaacctaagtgtttgtaaacttccgacttcaactatatattagAGCCAGAATACAGTGATACGGTGTGTCTGAGATtctagtatatacagtacatgatatCAAATTTGAATGGACGCgaacacatattttgcagatgtatTCGAAGATGCAGTAATATACTTATGTTTCTAGCAGTGCGGTATTCTGAGGACCAGCGGGGGCTGGGGACATGACGTGTCCCTGCCTGGCccttttcacaactgtcttggtgtgtttggacaataaTAGTTTGTTgataatgtggacaccaaggaacttgaagctctcaacctgctccactacagccccgtcgatgagaatacactaacaatacaaaacaatacccacaaatccccaaaataataaaaaataatctgAACAAGCAATGTCAGTCTggaatatatatacactactgttcaaaagtttgaggtcacttagaaatgtccttgtttttgaaagaaaagcacattttatttCTCCATAAAAATAacttcaaattgatcagaaatacagtgtagacattgttaatgttgtaaatgactactgtagctggaaactgcatattttctatggaatatctacataggcgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacgttgtgttagctaatccaagtttatcattttaaaaggctaattgatcattagaaaacccttttgcaattatgttagcacagctgaaaactgttgtcttgactaaagaagcaataaaactggtcttctttagactagttgagtatctggagcatcagcatttgttggttcgattaccggctcaaaatggccagaaacaaataaccttcttctgaaattcgtcagtctattcttgttctgagaaatgaaggctattgccaagaaactgaagatctcatacaacgctatGTGGagaatatatttttctattttacAATCACCAAAATAATTTCCCTTAGAATGCCTTTGTTATACTTGTTCAGCAGCTCGAACCCAAAAATGATCATTCACAGGAATATTTTTTCTTTGTGTGAAATCACAACTTTGCAGTGTGATGCAGACAGAAATGGCATTATCTggaatctttttttttaaattttcaaGAAGGAAATGacacatttttttcactttcataagTCAATGttgggcaattccatggtaacagaatgatgctgagactcagattttccatttaaaatgtttgtcaaacaaaaaccaatgattgcaaaacc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU223734 True 2873 lncRNA 0.52 2 86412664 86458968

Neighbor

gene id symbol gene type direction distance location
LOC118936857 NA coding downstream 8509 86401369 ~ 86404155 (-)
tigara LOC106561357 coding downstream 272837 86134395 ~ 86139827 (-)
LOC110498321 LOC106561361 coding downstream 395100 86012158 ~ 86017564 (-)
dyrk4 LOC106561362 coding downstream 438500 85955508 ~ 85974164 (-)
LOC110498273 LOC106561367 coding downstream 459765 85948772 ~ 85952899 (-)
setd6 setd6 coding upstream 61054 86520022 ~ 86526770 (-)
LOC110498617 LOC106561447 coding upstream 199046 86658014 ~ 86676250 (-)
LOC118937297 LOC106561464 coding upstream 225119 86684087 ~ 86695202 (-)
LOC118942936 LOC106611498 coding upstream 240373 86699341 ~ 86701251 (-)
LOC110498636 LOC106561446 coding upstream 248508 86707476 ~ 86714996 (-)
G197660 NA non-coding downstream 51973 86357692 ~ 86360691 (-)
G197768 NA non-coding downstream 57680 86347892 ~ 86354984 (-)
G197765 NA non-coding downstream 96224 86316004 ~ 86316440 (-)
G197746 NA non-coding downstream 140601 86270818 ~ 86272063 (-)
G197739 NA non-coding downstream 153261 86258870 ~ 86259403 (-)
G197808 NA non-coding upstream 24713 86483681 ~ 86483970 (-)
G197824 NA non-coding upstream 45524 86504492 ~ 86504969 (-)
G197835 NA non-coding upstream 71574 86530542 ~ 86530878 (-)
G197836 LOC100380853 non-coding upstream 74991 86533959 ~ 86534243 (-)
G197837 NA non-coding upstream 75393 86534361 ~ 86534589 (-)
G197554 NA other downstream 448999 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 569171 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 1772908 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 2430497 83977965 ~ 83982167 (-)
G195427 NA other downstream 2508213 83881540 ~ 83904451 (-)
G198342 LOC100194703 other upstream 444068 86903036 ~ 86903956 (-)
G198912 NA other upstream 863171 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 3147869 89606837 ~ 89609890 (-)
G202279 NA other upstream 3918589 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 5130244 91589212 ~ 91591049 (-)

Expression


Co-expression Network