G197911


Basic Information

Item Value
gene id G197911
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86656218 ~ 86658572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224019
GATAACTGTTGTTGGTTAGCTAGGTAGTGAATTTgagccatattagcattgacatgaaatcagccaaaacaagacatggcatcaagaacaagatgaaacaGGTCACTCGCGATAccccacatggcagtttcttgtcattggtTGGTAGCTACCTGGcgatccagaatcacaacaactcatggacttctgccccattgaagcgtgAACATCGTTAGCTAACCCGTCTATTAAAAGCAGGTGTATCACAAACGTTTTTTTCTCAGCACCTGTTGCATGACAGCTTTTGTCacctacactatatacacacaaagAAGGTAATCAACAACCAACATAACAATATTCACATACAAGCTACACATTGTCTGGCAGTTTCGGTAGCTGGTTTATAGACCCTATGTATTCCATTGGTGAATTTAGGATCTATACAATTGTTACACCTTGCATTGCTTCCTGAAAAACTACATTCAGGGGTTTAAGTATTTTCCTATTTACAACATTTTGAAAACAGCATTTGGTTAACAGTATGATTAAAAAGTATATACAACCAATAAGAAAACCTCTAACTTAAAAACATGTACAGTTCATGTATAAATTGTGGACATGAGTCGTCTACTGATCTGTCAagttagtattttttttaaataaacagtcATTTTAAACATACGTGTTATTTTAAACATACCCATCAGTGTCAAAAGCTGTTGTAACTGTCATTTGTTCAGCTAAATTCAAAATGATTTTGTAAGGTATAGCTGCCGACTAAAAGTAAATCTTTGATTGTCTGGCATGGTGAACTCATGATTGACAGTTTACCAGTCTTGATTAAATTATTAGCTGCACTTCTACCTTTctgcatacaaaacaatatgTACATTGACATATAAGCTGACCGTTATAAAAATTGTACTCATTTCAACATTTTCAGATGAAAAATATATACATCATTGACCCATTCACCCCAGAAACACTATCAAGGGCCATGAAAAATAAGGCAATAATAACATTCCattgaacaaaactataaatAACTGGTCATCTTTACAAAACGTAAACATTTCAAAATCTTTCCTCAGATTCCAACATTTTTATAGTATTTCCCATTCACACCCCCCGCTCACTGaatgaatacattttaaaaaaggaatAAAATTAACAAAAACTAGGGTTTAGAAGGCATTTGTTTTTCcgaaaacagacagaacagaagaCTTGGAGAGgacctcccccacacacacagctgtaccCTGGGTGACCACCTTGTCATACCCCTGATGAGATGATGTCTGTGTCAATTATTGCTGATTGGTACATTTACCTCTGGGATTGTAAACACAAACATATACTGCAATATCAAAGACATCAGTTTAGCACCCGTTTCTCCATCCCTGTGGAATGAGGTCGCCTAGGccctatacactgagtatacaaaacaacattaagaacacctgctctttgcattacataaactgaccaggtgaatccaggtgaaagctatgatcccttattaaatccacttcaatcagtgtagatgaagaggagggcaACAGGTTAacggatttttaagccttgagacaattgagacatggattgtgtatgtgtgcctttcagaTTGTGAATcggcaagacaacatatttaagtgcctttgaacagggtctggtagtaggtgctgggcgcaccggtttgtgtcaagaactgcaacactgggtttcacactcaacagtttcccgtgtgtatcaagaatcgtccaccacccaaaagacatccagccaacttgacacaactgtgggaagcattggagtcaacagtggccagtatccctgtggaatgctttcgacaccttgtagagtccatgccatgaaaaattgagtctgttctgagggtgAAAGGGGGCGGttgaactcaatattaggaaggtgttccaaatTTGGTAAACTCAGTGTACTGAGTAtcaaagggttagctaaaataagAGTCTATGGGTATAAAGGAACAGAAACTGAGTCTGTGACTCTTGAGACATAATTGGATGATCTTTAGGAACCATGGctcttctctctctggTCCTTGGAGAGTGTCTCATCTCCGTGACAATGGGAGACGGGGCAGAGCAGCGTGGAGCTGTCTAAGGTTGGTGACGTGGCGTCAGCCTTGCGCTCTGGGTCCagactggagactggagagactggggacaagggaggcagggaggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224019 True 2209 lncRNA 0.45 2 86656218 86658572

Neighbor

gene id symbol gene type direction distance location
LOC110498595 LOC106561448 coding upstream 31676 86573569 ~ 86624542 (+)
LOC110498585 LOC106561449 coding upstream 91969 86555475 ~ 86564249 (+)
LOC110498438 LOC106561350 coding upstream 135616 86481275 ~ 86520602 (+)
LOC110498407 LOC106561353 coding upstream 178380 86423710 ~ 86477838 (+)
LOC110498357 LOC106561358 coding upstream 524751 86124758 ~ 86131467 (+)
trnag-gcc-2 NA coding downstream 61044 86719616 ~ 86719686 (+)
trnag-gcc-3 NA coding downstream 61797 86720369 ~ 86720439 (+)
trnag-gcc-4 NA coding downstream 64056 86722628 ~ 86722698 (+)
trnag-gcc-5 NA coding downstream 66315 86724887 ~ 86724957 (+)
trnag-gcc-6 NA coding downstream 67068 86725640 ~ 86725710 (+)
G197910 NA non-coding upstream 897 86654981 ~ 86655321 (+)
G197905 NA non-coding upstream 7708 86648187 ~ 86648510 (+)
G197894 NA non-coding upstream 23025 86628314 ~ 86633193 (+)
G197863 NA non-coding upstream 83374 86572634 ~ 86572844 (+)
G197314 NA non-coding upstream 105345 86550468 ~ 86550873 (+)
G197912 LOC106561447 non-coding downstream 123 86658695 ~ 86659315 (+)
G197920 NA non-coding downstream 12950 86671522 ~ 86707093 (+)
G197932 LOC106561464 non-coding downstream 26719 86685291 ~ 86694185 (+)
G197901 NA non-coding downstream 48947 86707519 ~ 86708255 (+)
G198056 NA non-coding downstream 91654 86750226 ~ 86750662 (+)
G197069 NA other upstream 519610 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1636184 85010068 ~ 85054392 (+)
G195155 NA other upstream 2055894 84596410 ~ 84600324 (+)
G194395 NA other upstream 3096620 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3531253 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 378939 87037511 ~ 87039236 (+)
G198575 NA other downstream 491630 87150202 ~ 87150490 (+)
G198784 NA other downstream 835051 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 877364 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 1208305 87866877 ~ 87867967 (+)

Expression


Co-expression Network