G197912 (LOC106561447)


Basic Information

Item Value
gene id G197912
gene name LOC106561447
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86658695 ~ 86659315 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224020
ACGCTGGATTTGTTGATCTTCTCCTTAATCTTGGAGAGGGTCCCTTTGAGCCCTGTTTTCTGATGCGCCACATCCAGAGCAGCTTTGAATAGCTTGGGCGTGACTGTTCGAGGAGGGATCACCTGGGCCGGCTCCTTCTGAGGCTTCTTATCTTTCGTGAGCATCTTCCTGGCCTTCTTGCGGAGCAGCTTCTGGGACTCGGGGTAATGCACTAGAATCTCATTGAGGTCCTTCTTGTCCAGGATGAACAGGTTGGCGAAGCCATGAGCCACCACGTTTGCTGTTCTCCTGTTCCCTCCACCAACTGCTAGCAAGCTGATTTCCCCAAACACTGATCCCGCCCTCAGTGTGACAAACACAGTCTTCCCATCTGGCCCGCCCACCACCTGCACCTCTCCGGCTTTGATGATGTACATTTCCCGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224020 True 423 lncRNA 0.40 3 86658695 86659315

Neighbor

gene id symbol gene type direction distance location
LOC110498595 LOC106561448 coding upstream 34153 86573569 ~ 86624542 (+)
LOC110498585 LOC106561449 coding upstream 94446 86555475 ~ 86564249 (+)
LOC110498438 LOC106561350 coding upstream 138093 86481275 ~ 86520602 (+)
LOC110498407 LOC106561353 coding upstream 180857 86423710 ~ 86477838 (+)
LOC110498357 LOC106561358 coding upstream 527228 86124758 ~ 86131467 (+)
trnag-gcc-2 NA coding downstream 60301 86719616 ~ 86719686 (+)
trnag-gcc-3 NA coding downstream 61054 86720369 ~ 86720439 (+)
trnag-gcc-4 NA coding downstream 63313 86722628 ~ 86722698 (+)
trnag-gcc-5 NA coding downstream 65572 86724887 ~ 86724957 (+)
trnag-gcc-6 NA coding downstream 66325 86725640 ~ 86725710 (+)
G197911 NA non-coding upstream 123 86656218 ~ 86658572 (+)
G197910 NA non-coding upstream 3374 86654981 ~ 86655321 (+)
G197905 NA non-coding upstream 10185 86648187 ~ 86648510 (+)
G197894 NA non-coding upstream 25502 86628314 ~ 86633193 (+)
G197863 NA non-coding upstream 85851 86572634 ~ 86572844 (+)
G197920 NA non-coding downstream 12207 86671522 ~ 86707093 (+)
G197932 LOC106561464 non-coding downstream 25976 86685291 ~ 86694185 (+)
G197901 NA non-coding downstream 48204 86707519 ~ 86708255 (+)
G198056 NA non-coding downstream 90911 86750226 ~ 86750662 (+)
G198070 LOC106581475 non-coding downstream 99538 86758853 ~ 86759083 (+)
G197069 NA other upstream 522087 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1638661 85010068 ~ 85054392 (+)
G195155 NA other upstream 2058371 84596410 ~ 84600324 (+)
G194395 NA other upstream 3099097 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3533730 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 378196 87037511 ~ 87039236 (+)
G198575 NA other downstream 490887 87150202 ~ 87150490 (+)
G198784 NA other downstream 834308 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 876621 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 1207562 87866877 ~ 87867967 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00019618 NA coding CM030124.1 CM030124.1 33145821 ~ 33179133 (-)