G197932 (LOC106561464)


Basic Information

Item Value
gene id G197932
gene name LOC106561464
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 86685291 ~ 86694185 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224045
CGGCACAACTTCAACATCATCTCTGGATCTCGCGACAGGCTGTGGCATCTTGAGGCCGAGGCCCGTCACGAACCAGCCCACGACATTCGAGTTCTGTGAGTCCTCATCTCCTTTGAGGGACTCCGGAGATGGTGAGAGAACCTGGGCCTGTTGGGCCTTACTTAGGGCCTCTATGTAGCCTGCAGGGAGCATCACAGGCTGAGGAATAGCATTCTTAATCCAGTTAACCACATTGGGGGGGAACTGTGGTAACTGATCCTCTTCCTCATATTCTGAAAACATCTCCACCACAGGTATATGTGGGAGGGGCTCTGCATCCGGCACATCTTTCATGTTATAAACCTCTgtttcatcctcctcctctcgaATATCCTCTCTGTACTTTTCATCTGGCTGGGGAACCACTTTACTCAGTCCATCTGCAATCCACTTAATCACCCCATTCCTTTCATCCTCCTGCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC106561464

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224045 True 461 lncRNA 0.51 7 86685291 86694185

Neighbor

gene id symbol gene type direction distance location
LOC110498595 LOC106561448 coding upstream 60749 86573569 ~ 86624542 (+)
LOC110498585 LOC106561449 coding upstream 121042 86555475 ~ 86564249 (+)
LOC110498438 LOC106561350 coding upstream 164689 86481275 ~ 86520602 (+)
LOC110498407 LOC106561353 coding upstream 207453 86423710 ~ 86477838 (+)
LOC110498357 LOC106561358 coding upstream 553824 86124758 ~ 86131467 (+)
trnag-gcc-2 NA coding downstream 25431 86719616 ~ 86719686 (+)
trnag-gcc-3 NA coding downstream 26184 86720369 ~ 86720439 (+)
trnag-gcc-4 NA coding downstream 28443 86722628 ~ 86722698 (+)
trnag-gcc-5 NA coding downstream 30702 86724887 ~ 86724957 (+)
trnag-gcc-6 NA coding downstream 31455 86725640 ~ 86725710 (+)
G197912 LOC106561447 non-coding upstream 25976 86658695 ~ 86659315 (+)
G197911 NA non-coding upstream 26719 86656218 ~ 86658572 (+)
G197910 NA non-coding upstream 29970 86654981 ~ 86655321 (+)
G197905 NA non-coding upstream 36781 86648187 ~ 86648510 (+)
G197894 NA non-coding upstream 52098 86628314 ~ 86633193 (+)
G197901 NA non-coding downstream 13334 86707519 ~ 86708255 (+)
G198056 NA non-coding downstream 56041 86750226 ~ 86750662 (+)
G198070 LOC106581475 non-coding downstream 64668 86758853 ~ 86759083 (+)
G198071 NA non-coding downstream 65200 86759385 ~ 86759611 (+)
G198086 NA non-coding downstream 78339 86772524 ~ 86772807 (+)
G197069 NA other upstream 548683 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 1665257 85010068 ~ 85054392 (+)
G195155 NA other upstream 2084967 84596410 ~ 84600324 (+)
G194395 NA other upstream 3125693 83558920 ~ 83559598 (+)
LOC110497837 tmem263 other upstream 3560326 83119221 ~ 83124965 (+)
G198417 LOC106561459 other downstream 343326 87037511 ~ 87039236 (+)
G198575 NA other downstream 456017 87150202 ~ 87150490 (+)
G198784 NA other downstream 799438 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 841751 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 1172692 87866877 ~ 87867967 (+)

Expression


Co-expression Network