G198479


Basic Information

Item Value
gene id G198479
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87117075 ~ 87117488 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224673
ATGATATAGTTTGACTGTTTGTGGAGGAaatcttcagttgtgcaaacccacagtttcatcagctgtctgggtggctggtctcagacgatcctgcaggtgaagaagccggatgtggaggtcctgggctggcatggttgcacgtggtctgtggttgtgaggccggttggacgcacAGCCAacttctctaaaatgacattggatgcggcttatggtagagaaatgaacatgacattttcttgcaacagctctggtagacattcctgcagtcagcatgccaattgtacgctccctcaaaacttgagacatggcattgtggcattgtgttgtgacaaaactgtgcGTTTTATTGACCCCAGtccaaggtgcacctgtgtaataatcaatgttccctctaagctgcgttCGGGCACGCAA

Function

NR:

description
hypothetical protein EH28_22881

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224673 True 414 lncRNA 0.49 1 87117075 87117488

Neighbor

gene id symbol gene type direction distance location
si:ch211-266k8.4 LOC106561457 coding upstream 89522 86973327 ~ 87027553 (+)
LOC110498720 LOC106561456 coding upstream 179858 86910470 ~ 86937217 (+)
LOC118942939 NA coding upstream 229049 86887279 ~ 86888026 (+)
zgc:162634 NA coding upstream 231703 86884172 ~ 86898082 (+)
LOC110498682 LOC106561452 coding upstream 243810 86787804 ~ 86873265 (+)
dkk3b LOC106561478 coding downstream 150446 87267934 ~ 87276184 (+)
far1 LOC106561480 coding downstream 171274 87288762 ~ 87323586 (+)
LOC118937298 ovch2 coding downstream 218309 87335797 ~ 87338557 (+)
LOC118942946 ovch2 coding downstream 223422 87340910 ~ 87341891 (+)
LOC110498866 ovch2 coding downstream 228110 87345598 ~ 87351199 (+)
G198328 NA non-coding upstream 94324 87022269 ~ 87022751 (+)
G198258 NA non-coding upstream 210295 86906483 ~ 86906780 (+)
G198257 NA non-coding upstream 210601 86905951 ~ 86906474 (+)
G198254 NA non-coding upstream 216004 86900870 ~ 86901071 (+)
G198482 NA non-coding downstream 2300 87119788 ~ 87120017 (+)
G198569 NA non-coding downstream 26056 87143544 ~ 87144263 (+)
G198571 NA non-coding downstream 28373 87145861 ~ 87146134 (+)
G198586 NA non-coding downstream 49819 87167307 ~ 87167539 (+)
G198587 NA non-coding downstream 50265 87167753 ~ 87167956 (+)
G198417 LOC106561459 other upstream 77839 87037511 ~ 87039236 (+)
G197069 NA other upstream 980467 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 2097041 85010068 ~ 85054392 (+)
G195155 NA other upstream 2516751 84596410 ~ 84600324 (+)
G194395 NA other upstream 3557477 83558920 ~ 83559598 (+)
G198575 NA other downstream 32714 87150202 ~ 87150490 (+)
G198784 NA other downstream 376135 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 418448 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 749389 87866877 ~ 87867967 (+)
LOC110499234 rbl2 other downstream 2302281 89395057 ~ 89422438 (+)

Expression


Co-expression Network