G198658 (LOC106561478)


Basic Information

Item Value
gene id G198658
gene name LOC106561478
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87267989 ~ 87276175 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224872
aatgtttatttattcaAATTACATCATGAGTGCTTTGCTTGGTTAGTTGATGTGGTTGAGAACACATCTGTCAGCCCCATTTTCATCTGGTTCGGCCATTGTCTGTCTAACATTGCCAGACCGATACTAGAGCCCAGTCAGAAGTTTCCAGAAAACACACAACCATGTCTCATCTAAAGGAATGAGTCCTCTTCACTGTATCTGATGGTCACCTAGTTCACACACAGGGATCCGCGtCCATGGGGTTGGCAGTGGAGTCCACCAGCACAGAGGCAGTATTCCCTCGGCCCCTCCACGTCCCAGGACAGCATGTCCATCAGCAAGTTAGGGTGGCTGTTGCACGCTTCACCCTTATCCGGCCTGGGCTGGCACACTGGGAAGAGCAGCTCTTTGAGAACGGCACAGCAGTGTTTTGGCTTACAGTCACTCTGGTACTGACAGATGCTGCCTGCATTGCCCTTGGTGGCATTCTTAGTGCACtgtccccacacacacatctggTCTGAACAACACTCTTCATCCTTTGTgcaggtCATATCAACATCTTTGCAGGGGAGGCACTTGGAGTTTACTATCTCATATAGGCAGTAACTGTTCTTACCACAATCTTCATCAAGCATGCATTCATGATCAACTTCGTTCCATTGGCCATTGATCTCGATATGGGTCTGGAAGTGAGTcccccctgttctgttgtccattTCCTTGTCAATCCTCTCCGCCATGTAAACAGTGTGGTTCCTGTTGTCCCTATATGTACTGGTCTCATTGTGGTAGTTTGGAAGCAAATCCTGTATATTAAGCAATGATTTGGCACTCTCATTGACCATCTGATCCACAGCTTCCTCCAGTACGTGCTGCGTGTCCTCCATCAACATCTCCACCTCTCGGAACATTTCGTTTAGAGTCGCATGACCTCCATTCAAATGGTCCTCGAAACTAACACCAGTTATCGAGATGTCCGGGATGGTCTTCGGGCTCGAGATTCcattcactaaacacaaacaaaaaGTAAGCGCTGCAACCTGCATCATCCTCGTGGTGGGACCAGACATACTTGTACCAACAGCATGCAA

Function

NR:

description
dickkopf-related protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU224872 True 1076 lncRNA 0.48 7 87267989 87276175

Neighbor

gene id symbol gene type direction distance location
mical2b LOC106573205 coding downstream 8386 87170110 ~ 87259603 (-)
LOC110498811 NA coding downstream 117882 87144723 ~ 87150107 (-)
LOC110498779 LOC106561460 coding downstream 129220 87043889 ~ 87138769 (-)
rassf10a LOC106561459 coding downstream 228473 87037294 ~ 87039516 (-)
LOC110498693 LOC106561455 coding downstream 300484 86938295 ~ 86967505 (-)
LOC110498882 NA coding upstream 88075 87364250 ~ 87366299 (-)
ppfibp2b LOC100380737 coding upstream 89988 87366163 ~ 87492584 (-)
olfml1 LOC106561482 coding upstream 216426 87492601 ~ 87496745 (-)
syt9b LOC106561481 coding upstream 242745 87518920 ~ 87543745 (-)
LOC110498902 LOC106561484 coding upstream 289153 87565328 ~ 87689612 (-)
G198676 NA non-coding downstream 44611 87222452 ~ 87223378 (-)
G198562 NA non-coding downstream 134753 87133019 ~ 87133236 (-)
G198552 NA non-coding downstream 144890 87122743 ~ 87123099 (-)
G198547 NA non-coding downstream 154368 87113422 ~ 87113621 (-)
G198543 NA non-coding downstream 157209 87110521 ~ 87110780 (-)
G198900 NA non-coding upstream 12837 87289012 ~ 87301865 (-)
G198908 NA non-coding upstream 25759 87301934 ~ 87302148 (-)
G198909 NA non-coding upstream 26018 87302193 ~ 87302446 (-)
G198917 NA non-coding upstream 26625 87302800 ~ 87303618 (-)
G198922 NA non-coding upstream 33415 87309590 ~ 87309905 (-)
G198342 LOC100194703 other downstream 364033 86903036 ~ 86903956 (-)
G197554 NA other downstream 1304324 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1424496 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2628233 84596433 ~ 84910878 (-)
G195486 LOC106573171 other downstream 3285822 83977965 ~ 83982167 (-)
G198912 NA other upstream 45964 87322139 ~ 87326469 (-)
LOC110499346 vps4a other upstream 2330662 89606837 ~ 89609890 (-)
G202279 NA other upstream 3101382 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4313037 91589212 ~ 91591049 (-)
G204024 NA other upstream 4511012 91787187 ~ 91788103 (-)

Expression


Co-expression Network