G198710


Basic Information

Item Value
gene id G198710
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87324493 ~ 87325503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU224945
ttcctgagcgatatgacggctgcgtggtcccatggtgtttatacttgcgtactattgtttgttgagatgaacgtggtatcttcaggcgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacgatttttttctgaggtcttggctgatttcttttgtttttccaatgatgtcaagcaaagagtttgaagttaggccttgaaatacatccacaggtacacctccaattgattcaaatgatgtcaattagcctatcagaagcttctaaagccattacataattttctggaattttgcaagttgtttaaaggcacagtcaacttagtgtatgtaaacttctgacccactagaattgtgatgcagtgaattataagtgaaataatctgtctgtaaacaattgtaggaaaaatgacttgtgtcatgcacacagtagatgtcctaaccgacttgccaaaactatagtgtgttaacaagaaatgtgtggagtggatgaaaaacaagttttaatgactccaacataagtgtatgtaaacttccaacttcaactgtatcatggATGTTTGGCCAGATTTATAAAATAGTCCTTTGATCTGTGCTCACATGATCCATTGGGAATAAGATTAGTAAGTGATCCACTTTCTGGGAGTTTTGTGTGAATTGTGCCTGAACTTGTCTATGACAAAATATTAATGTTTGTcattagttaccacagccacaaagtaataaACCCAGTCTATTTCTACAATTCTGCCTCTTAAAAtaggattttaaacctaaccttgaaCACACTGccaaccttatgcctaaccttaaatgaagaccaaaaagcacatttttgttttgatAAACTTTTACGATgttgccaattttgactttgtggctatacTATCTAGTTGAAACTTAAAAAGAGCACTCCGATCTATGTGTTCTAATCAGTTTGTGTACAACTCTAGGTAGACTTCAAGATCTTGCTTAAAAAGTATTTTTATGCTATTAAACAAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU224945 True 1011 lncRNA 0.36 1 87324493 87325503

Neighbor

gene id symbol gene type direction distance location
far1 LOC106561480 coding upstream 907 87288762 ~ 87323586 (+)
dkk3b LOC106561478 coding upstream 48309 87267934 ~ 87276184 (+)
si:ch211-266k8.4 LOC106561457 coding upstream 296940 86973327 ~ 87027553 (+)
LOC110498720 LOC106561456 coding upstream 387276 86910470 ~ 86937217 (+)
LOC118942939 NA coding upstream 436467 86887279 ~ 86888026 (+)
LOC118937298 ovch2 coding downstream 10294 87335797 ~ 87338557 (+)
LOC118942946 ovch2 coding downstream 15407 87340910 ~ 87341891 (+)
LOC110498866 ovch2 coding downstream 20095 87345598 ~ 87351199 (+)
LOC118942948 ovch2 coding downstream 25937 87351440 ~ 87353703 (+)
LOC110498941 ccdc73 coding downstream 587029 87912532 ~ 87931639 (+)
G198721 NA non-coding upstream 4613 87319588 ~ 87319880 (+)
G198717 NA non-coding upstream 20233 87304061 ~ 87304260 (+)
G198651 NA non-coding upstream 58872 87265261 ~ 87265621 (+)
G198650 LOC107575789 non-coding upstream 59508 87264754 ~ 87264985 (+)
G198589 NA non-coding upstream 154845 87169341 ~ 87169648 (+)
G198711 NA non-coding downstream 77 87325580 ~ 87326445 (+)
G198728 NA non-coding downstream 14479 87339982 ~ 87340238 (+)
G198737 NA non-coding downstream 34021 87359524 ~ 87360204 (+)
G198739 NA non-coding downstream 45044 87370547 ~ 87372391 (+)
G198782 NA non-coding downstream 172791 87498294 ~ 87499092 (+)
G198575 NA other upstream 174003 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 285257 87037511 ~ 87039236 (+)
G197069 NA other upstream 1187885 86135616 ~ 86136608 (+)
LOC110498034 LOC106573178 other upstream 2304459 85010068 ~ 85054392 (+)
G195155 NA other upstream 2724169 84596410 ~ 84600324 (+)
G198784 NA other downstream 168120 87493623 ~ 87496735 (+)
G198811 LOC106561481 other downstream 210433 87535936 ~ 87536928 (+)
G199223 hipk3 other downstream 541374 87866877 ~ 87867967 (+)
LOC110499234 rbl2 other downstream 2094266 89395057 ~ 89422438 (+)
G202039 NA other downstream 3121615 90447118 ~ 90447573 (+)

Expression


Co-expression Network