G198913


Basic Information

Item Value
gene id G198913
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87362386 ~ 87363306 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU225174
GGATTTTTTGGTTATTGtctagcagtcagtcagtcagtccctacaAAGGGTGTTATAATATGGTGACACAGCAtggtaaaaatgtttttttttgcagtcCAACACGAATGATACAATGGTATTAGCCCATGACAACCCTGTACCTTAATCTTTTGTTATCATGGAATACTATGGTCTTACCCTGTGGAGGTCTGTCAATAGTGAAGCACAAATTGAGTTGTTCAGAGTGACTCTTCAGCACCTTCTCTAGTTCCTCCCGCAGTAGCATATCCTTAGTCTGGGGGCAAGAGACCATCATTAGAAGAAGGTTTACAATTGCTAGGGCTTCAACTAATACAGTGTGTCATTGAGTCATCAGATCGTCTGTTGTGCCTGTTGATCGTCTGTTGATCGTCTGTTGTGCATGGAGGTAATCCCCGAAAAAGCACCCAGACATTTAAGCCAATTTGCAGTTGATGATGAACTTTCCCCAACTTATAAATAGTCCTACAAGTAAGtgccaactgtatttttttaaatgacaattCCAATGATgtctggacagactggagaggtgggttggcctccggtccagttctaaattggtttaggacctaTTTAACCGGTCAATAGTTTTTTCTCACTCTTGGTGAACATAACTAATAGAAAATACATGTCACATGTGGCGTTCCACAAGGTTTGATTTTGGGTCCTGTACTGTTCAGTTTATATACAGGGTTATGTTATCAGAAAGCACAACATTGATTTTCATAtcaccagaggattttagctCCACAGATAAATGATTAGACTGTATTActgatttaaatacttggatggctcacaacttcctccagctaaatcaagtCAAGACCGAGGTAATTATTGTTGGAttcaaaacacagagagaaaatcTAGCTGTAGATGTTAATTCATGGGCAA

Function

NR:

description
putative RNA-directed DNA polymerase from transposon X-element

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU225174 True 921 lncRNA 0.40 1 87362386 87363306

Neighbor

gene id symbol gene type direction distance location
mical2b LOC106573205 coding downstream 102783 87170110 ~ 87259603 (-)
LOC110498811 NA coding downstream 212279 87144723 ~ 87150107 (-)
LOC110498779 LOC106561460 coding downstream 223617 87043889 ~ 87138769 (-)
rassf10a LOC106561459 coding downstream 322870 87037294 ~ 87039516 (-)
LOC110498693 LOC106561455 coding downstream 394881 86938295 ~ 86967505 (-)
LOC110498882 NA coding upstream 944 87364250 ~ 87366299 (-)
ppfibp2b LOC100380737 coding upstream 2857 87366163 ~ 87492584 (-)
olfml1 LOC106561482 coding upstream 129295 87492601 ~ 87496745 (-)
syt9b LOC106561481 coding upstream 155614 87518920 ~ 87543745 (-)
LOC110498902 LOC106561484 coding upstream 202022 87565328 ~ 87689612 (-)
G198915 NA non-coding downstream 1229 87360648 ~ 87361157 (-)
G198914 NA non-coding downstream 2241 87358948 ~ 87360145 (-)
G198942 NA non-coding downstream 22780 87339254 ~ 87339606 (-)
G198936 LOC106561584 non-coding downstream 31052 87331056 ~ 87331334 (-)
G198935 NA non-coding downstream 31535 87330641 ~ 87330851 (-)
G198975 NA non-coding upstream 133809 87497115 ~ 87498590 (-)
G198974 NA non-coding upstream 136248 87499554 ~ 87500280 (-)
G199004 NA non-coding upstream 184810 87548116 ~ 87548338 (-)
G199005 NA non-coding upstream 185266 87548572 ~ 87548793 (-)
G199006 NA non-coding upstream 188349 87551655 ~ 87551883 (-)
G198912 NA other downstream 35917 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 458430 86903036 ~ 86903956 (-)
G197554 NA other downstream 1398721 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1518893 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2722630 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 2243531 89606837 ~ 89609890 (-)
G202279 NA other upstream 3014251 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4225906 91589212 ~ 91591049 (-)
G204024 NA other upstream 4423881 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 5034754 92398054 ~ 92443838 (-)

Expression


Co-expression Network