G198975


Basic Information

Item Value
gene id G198975
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87497115 ~ 87498590 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU225242
atttcctagCCGTCAAAATTAGCAAAATATAGTCCTTTATTTGTTTTGGGAATTTTCGATACTCCCTGTCTAGATTTCATTTCAGTGATTATTAGAGggctgtatgaatgtaggtccttTATCATTTCTACACCGTTTAGATTTGGTTTTAGTCcattttaaagtatattgagTTCGTCTCCACCAGGGGCCGGATTGGACCCCTCAAGTGCCGGATCCGTACagtatgtttgacacccctgtaaCTAAAACATCTTTGGTTACAGAACAACAGGAGTTATTTTCAAGGCTACAATGCTGAAGTCAACTGAAATAAAACTTCGGCTGTCACATAGCCTGGCAGTTAAGAGTGTTGgtccagtaactgaaagattACTGGTTTCAATCCCTGAGCCGATTAGTtcaaaaatctgttgatgtgccctaattgctcctgtaagtcgctctggataagagtgtctgctgtcTAGTGGAAATATGCTTTGACATTTGAAATAAGGTAACTTCCTGACACTGAAAGGATAGTCAGATAAGTGGAAAGATGGCATGGAAAATATTACCTGATGAAACCAGTTCTATGCAATTGAGCTTTTGAGGGTtgttcacacacagacagatgatgCAATATCTCATTGACAACAGACGGAAAGGACAAACGCATTCAGACAGATGAAACCTGAGGGGTAACTTACAACGCAGGATCaaggagttagccagctaacttgctTAAACATTCTGATATAACTTTTATATTTTGTAGAAAGATAAGATTGAAATGGGCATAGTCGAATTTATTTAATATCTATGTTGTTGTTTCTTTGTGAACCATAAAATCAATAGTTATTTCTGGTTACTTATCAAAGTTAGCTAACTAATGGATTATACTTTTTAGTGTACCTGTCTGATTTCCACCCAAGACATAAAGTGCTCATGCCTTACATCCAGGTCCATGTAGAGACCATGTCTAGTTGTTACTATTCAAGTTAAAAACCCATCCCACCAATTGCATTATACAACAGCATACATAATTGATCATTAGGATTTGAAAATAAATGGTGCCTTTTGCATTCACAATGCATACTATACCACAACTTTAACTGTTAAGAGGAACTGATCAGGAGTGACATTCAAAAACTATCTGGATGAGGATTTTGCAAACGATTGTAGCCTATATCAAATTCTCAATAGCAAAACTGTATTAAAGGAGCGAAACAAACTTGCAATGAAAGGTTACAGGAAGTGTCGATTGCTGAAAGTACACAAACTCTTTAAATGAACCAAAAACAAACGTACTGGACTGGATACAGCTTGCATGCAGGTCCTCAGGAGGAAATGAAAACTTCAGTCTTCTCCAGATAATGTGGCGCCACCTGCTGGTAGAAACAAGGTCACTGTCTGTTGGATTCAATTAAATCAACCCACAGAGGGATAGAAGTAATCTTCTAAAACTATAAACAAAGATGAAGAAATCTAGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225242 True 1476 lncRNA 0.38 1 87497115 87498590

Neighbor

gene id symbol gene type direction distance location
olfml1 LOC106561482 coding downstream 370 87492601 ~ 87496745 (-)
ppfibp2b LOC100380737 coding downstream 4531 87366163 ~ 87492584 (-)
LOC110498882 NA coding downstream 130816 87364250 ~ 87366299 (-)
mical2b LOC106573205 coding downstream 237512 87170110 ~ 87259603 (-)
LOC110498811 NA coding downstream 347008 87144723 ~ 87150107 (-)
syt9b LOC106561481 coding upstream 20330 87518920 ~ 87543745 (-)
LOC110498902 LOC106561484 coding upstream 66738 87565328 ~ 87689612 (-)
kiaa1549la kiaa1549l coding upstream 303472 87802062 ~ 87854859 (-)
LOC110498926 hipk3 coding upstream 360767 87859357 ~ 87900425 (-)
LOC110498933 depdc7 coding upstream 408909 87907499 ~ 87911415 (-)
G198913 NA non-coding downstream 133809 87362386 ~ 87363306 (-)
G198915 NA non-coding downstream 135958 87360648 ~ 87361157 (-)
G198914 NA non-coding downstream 136970 87358948 ~ 87360145 (-)
G198942 NA non-coding downstream 157509 87339254 ~ 87339606 (-)
G198936 LOC106561584 non-coding downstream 165781 87331056 ~ 87331334 (-)
G198974 NA non-coding upstream 964 87499554 ~ 87500280 (-)
G199004 NA non-coding upstream 49526 87548116 ~ 87548338 (-)
G199005 NA non-coding upstream 49982 87548572 ~ 87548793 (-)
G199006 NA non-coding upstream 53065 87551655 ~ 87551883 (-)
G199063 NA non-coding upstream 165196 87663786 ~ 87664315 (-)
G198912 NA other downstream 170646 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 593159 86903036 ~ 86903956 (-)
G197554 NA other downstream 1533450 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 1653622 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 2857359 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 2108247 89606837 ~ 89609890 (-)
G202279 NA other upstream 2878967 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 4090622 91589212 ~ 91591049 (-)
G204024 NA other upstream 4288597 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 4899470 92398054 ~ 92443838 (-)

Expression


Co-expression Network