G199391


Basic Information

Item Value
gene id G199391
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 87966953 ~ 87967511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU225740
acctgtttcaaatgatgcgacacaaccaatataagccagttcagagagcaaacaggttgttgaaggtgggaaggagaacgtctgagaatggatactgtagtacagtgcattgtaggctgtatactgtacaatggacaaattgtctggccctgaacattgtgctttccatttattaacagtactgactgttcaatagattttgactggttgcaggttcttatcaacaaagaacaataattacagtatcacagagacaaaggacaagtttgtgagatgcagggtacagtactgtaaaaataggggtaaaaggaggaggaagaacaaaaaacaaaattgcaaatagcaaagcagagtagtaatttctgatcaattttgagctactatgacagaacatgttttcgttcatcaaaagacaatgacagaaaaatatgatttttttttagataaaaaatgtacttctccctgggaattgtatgttttgaacaatgtgttttctattgcttgagagtgtatatcactctcaatcattttgatcactttgtttatgatttgagagcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU225740 True 559 lncRNA 0.50 1 87966953 87967511

Neighbor

gene id symbol gene type direction distance location
wt-t1b wt1 coding upstream 676 87946473 ~ 87966277 (+)
LOC110498941 ccdc73 coding upstream 35314 87912532 ~ 87931639 (+)
LOC118942948 ovch2 coding upstream 613250 87351440 ~ 87353703 (+)
LOC110498866 ovch2 coding upstream 615754 87345598 ~ 87351199 (+)
LOC118942946 ovch2 coding upstream 625062 87340910 ~ 87341891 (+)
LOC110498955 LOC105030318 coding downstream 82587 88050098 ~ 88070895 (+)
mpped2 mppd2 coding downstream 395800 88363311 ~ 88389495 (+)
LOC110499041 LOC106561493 coding downstream 431126 88398637 ~ 88567065 (+)
LOC110499106 LOC106561497 coding downstream 655858 88623369 ~ 88630357 (+)
LOC110499113 LOC106561499 coding downstream 694402 88661913 ~ 88667515 (+)
G199218 hipk3 non-coding upstream 107048 87855403 ~ 87859905 (+)
G199174 NA non-coding upstream 162267 87802075 ~ 87804686 (+)
G199144 NA non-coding upstream 204156 87762579 ~ 87762797 (+)
G199138 NA non-coding upstream 209284 87757264 ~ 87757669 (+)
G199134 NA non-coding upstream 214424 87752315 ~ 87752529 (+)
G199542 dnajc24 non-coding downstream 217919 88185430 ~ 88194347 (+)
G199731 NA non-coding downstream 289696 88257207 ~ 88257452 (+)
G199740 NA non-coding downstream 295121 88262632 ~ 88262883 (+)
G199743 NA non-coding downstream 298141 88265652 ~ 88266097 (+)
G199761 NA non-coding downstream 311182 88278693 ~ 88278908 (+)
G199223 hipk3 other upstream 98986 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 430025 87535936 ~ 87536928 (+)
G198784 NA other upstream 470218 87493623 ~ 87496735 (+)
G198575 NA other upstream 816463 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 927717 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 1452258 89395057 ~ 89422438 (+)
G202039 NA other downstream 2479607 90447118 ~ 90447573 (+)
G202185 NA other downstream 2749431 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 3269514 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 3398826 91366282 ~ 91543765 (+)

Expression


Co-expression Network