G199648


Basic Information

Item Value
gene id G199648
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88182505 ~ 88236263 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU226029
CTGTAAAGGGAGTGAGAATGTCCACTCACTGTTATAGTGCTCCCAAATAGGTCTGTTTTCTGAACATAATTGAAACCTTACAGATCAGATCTCATTCAGATCAGGGGTTTTATGCACGTCCAAAAAAAGGGACCTGCATGGTTAAAATAATGTGGGCCTGCCTCCAGTGCATAGATCAAACGGGATTGTCAGCTCACTGTTTAACTCCTCTCAAACTTTAATAACGCTTTGGTGATTTTAAGATTAATTTCCAAGCATTCTCAGGAGCCAAACCCTTTATCGACAGTCTTGACTACTTCGCGATTGCATTGGGCAGGACAAAAAAAGTACTTAATTGAGAGGAGGGAAGGCTATGCTTGGTTATTAACCAAATAAAACGAAATGGGGAaaaaacattttgtatttttgtttctcAATACGATGTATACAGGCACCAAAAGCACATCAGGCTACTCTTGTTCCATGTTCATATGGGCTGTGTTTCCGCTGTAAAAATGAATGCCATAACCAACTATGTTACTGCTAAAACCTGCTTTTGATTGGTCTTAACTATCCCTGTCAAAGCTGCCTGAAATTAGCACTTTGGatcatgtttttaaggacacacctaAAATATTTCCACCCCTCCCATCTGAGCGCAAGCGAGCTGATATAACACGGGTAAATTGCATAACCTGCCGTTGGGCCTGGAAAATGCTAGTGCGACAGTTTTTACATGAAGAAATTACAAACTATAATGCGTTTGAAACTTTTGATGCCTTAACACCAGCTGAAAATAGAGCCCTTAGTCTCTGGTAGACCTTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTGTTGAGTAGACCCTGGAGTCCTATTGAGGAGACCCTGGAGTCCTATTGAGGAGACCCTGGAGTCCTATTGAGGAGACCCTGAAGTCATATTGAGTAGACCCTGAAGTCTTATTGAGTAGACCCTGAAGTCTTATTGAGTAGACCCTGGAGTCCTATTGAGGAGACCCTGAAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGGAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAGACCCTGAAGTCCTATTGAGTAAAATAATCTGCACTTTGTTTGCACCCCCCTTCCATTGTGAAAAGCAAATGGCTCGGTAACTTGTTAGCTCTTAACTTTGTTTGCATGTAAATACATCTTTTTTTTCCTAGACTCAATGCGGTTACAAACGGCCTCCACACTTCACCACAGACCCCTCTAGTGAATGCCAACATTTTTGTCTTATTGTCCCTCAGCCCCAATGTTGGCAGATAGGAGAGGTTACAGCAATGGGACGGGGTCATGGGTTCATTAGGCTGTTCGCTAAAATCTATCCTTTTGTAACAGAAACAGCTTGAGCGGGGCAAACCACGCTTTTCACCAATATCCCACAGTCTGAACCAGGGCGAGACCTGCCAGTGGGCCAGCAACAGTCCAAACCTTAATCCACTGTGACATCAATTAGGAATAATCTCATCACTTTTAGAGATTGGGCTTGTCAAAACTTTAATTAAGTTCTCTCGGTGTCTCTCCTATAGTGCAGACAAGATCAACAACACATTATGGTATAGTGATGGACTTTAGAATCCCAGAGGCGATTTGTGTGGATGTCACTTTTAACCTGGTGTGAACTTGGGTCTCTGGAGAAATCTTCTATATTAGTTTACAGTTGGAAAATGTATATGTTCAGCTC

Function

NR:

description
PREDICTED: vegetative cell wall protein gp1-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU226029 True 1912 lncRNA 0.64 2 88182505 88236263

Neighbor

gene id symbol gene type direction distance location
LOC110498933 depdc7 coding downstream 271090 87907499 ~ 87911415 (-)
LOC110498926 hipk3 coding downstream 282080 87859357 ~ 87900425 (-)
kiaa1549la kiaa1549l coding downstream 327646 87802062 ~ 87854859 (-)
LOC110498902 LOC106561484 coding downstream 492893 87565328 ~ 87689612 (-)
syt9b LOC106561481 coding downstream 638760 87518920 ~ 87543745 (-)
LOC110499068 LOC106561495 coding upstream 333088 88569351 ~ 88574203 (-)
LOC110499075 LOC106561496 coding upstream 394216 88630479 ~ 88656952 (-)
znf277 znf277 coding upstream 527295 88763558 ~ 88770972 (-)
LOC110533889 NA coding upstream 569825 88806088 ~ 88807501 (-)
LOC110499152 lrrn3 coding upstream 723109 88959372 ~ 88971921 (-)
G199654 NA non-coding downstream 66341 88115664 ~ 88116164 (-)
G199627 LOC106561490 non-coding downstream 114258 88061024 ~ 88068247 (-)
G199416 NA non-coding downstream 204757 87977417 ~ 87977748 (-)
G199411 NA non-coding downstream 210731 87971551 ~ 87971774 (-)
G199408 NA non-coding downstream 213454 87968528 ~ 87969051 (-)
G199774 NA non-coding upstream 50866 88287129 ~ 88287365 (-)
G199935 NA non-coding upstream 59651 88295914 ~ 88296128 (-)
G199947 NA non-coding upstream 85820 88322083 ~ 88322653 (-)
G199948 NA non-coding upstream 86558 88322821 ~ 88323081 (-)
G200039 NA non-coding upstream 239800 88476063 ~ 88476326 (-)
G198912 NA other downstream 856036 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 1278549 86903036 ~ 86903956 (-)
G197554 NA other downstream 2218840 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 2339012 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 3542749 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 1370574 89606837 ~ 89609890 (-)
G202279 NA other upstream 2141294 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 3352949 91589212 ~ 91591049 (-)
G204024 NA other upstream 3550924 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 4161797 92398054 ~ 92443838 (-)

Expression


Co-expression Network