G199808


Basic Information

Item Value
gene id G199808
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88346077 ~ 88346415 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU226193
ACCAGGTTGTTACTGAAATACGTATGATAGTAGCCTTGTGTTTTTTATTGTTATTAATGCCAATGCTGTTTTCTAGGCTTGTTTTCACTTAATACTTTGGGATATTAATTTGTCAAGTTTGGAGAAACAGAAGTCTGTTTGGTTTAAATTCCCTAGGTGCAACTGCATGGTATTTGCAACTATAACGAGTCTGGGCTATGATCAATTAAGCCATATCAATGCAGTTAAACAGgttaatgtaaaataatgaattgtGTTGGCTTACACTTATGGCACTTCCAAGGGCGTTTCATGATGATTATTACAGTCCTGTCAATCATGTTATTTGCAGTATTTAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226193 True 339 lncRNA 0.35 1 88346077 88346415

Neighbor

gene id symbol gene type direction distance location
LOC110498955 LOC105030318 coding upstream 275182 88050098 ~ 88070895 (+)
wt-t1b wt1 coding upstream 379800 87946473 ~ 87966277 (+)
LOC110498941 ccdc73 coding upstream 414438 87912532 ~ 87931639 (+)
LOC118942948 ovch2 coding upstream 992374 87351440 ~ 87353703 (+)
LOC110498866 ovch2 coding upstream 994878 87345598 ~ 87351199 (+)
mpped2 mppd2 coding downstream 16896 88363311 ~ 88389495 (+)
LOC110499041 LOC106561493 coding downstream 52222 88398637 ~ 88567065 (+)
LOC110499106 LOC106561497 coding downstream 276954 88623369 ~ 88630357 (+)
LOC110499113 LOC106561499 coding downstream 315498 88661913 ~ 88667515 (+)
LOC110499119 LOC106573246 coding downstream 345012 88691427 ~ 88726701 (+)
G199800 NA non-coding upstream 22158 88323695 ~ 88323919 (+)
G199799 NA non-coding upstream 22495 88323293 ~ 88323582 (+)
G199791 NA non-coding upstream 32131 88313487 ~ 88313946 (+)
G199790 NA non-coding upstream 33083 88312763 ~ 88312994 (+)
G199788 NA non-coding upstream 46488 88298406 ~ 88299589 (+)
G199870 NA non-coding downstream 83444 88429859 ~ 88430196 (+)
G199871 NA non-coding downstream 83880 88430295 ~ 88430609 (+)
G199883 NA non-coding downstream 116176 88462591 ~ 88474033 (+)
G199891 NA non-coding downstream 128081 88474496 ~ 88474706 (+)
G199223 hipk3 other upstream 478110 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 809149 87535936 ~ 87536928 (+)
G198784 NA other upstream 849342 87493623 ~ 87496735 (+)
G198575 NA other upstream 1195587 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1306841 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 1073354 89395057 ~ 89422438 (+)
G202039 NA other downstream 2100703 90447118 ~ 90447573 (+)
G202185 NA other downstream 2370527 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2890610 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 3019922 91366282 ~ 91543765 (+)

Expression


Co-expression Network