G199891


Basic Information

Item Value
gene id G199891
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88474496 ~ 88474706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU226290
caaatattgtctgtgtagaaatacaatatactgtatgtaggattcATACAGAAGTCGTACAGAGACAGTGCTATACTGTAGAGTACAATTAGGCTTCTGATTTACATACATTGTATGTACTGAAGAGTAATGTCATTCACATAGTATGTGTTAGTACTGTAGACAATCTGGattacagtaaatgtttctgaatgtACACCTACTTGCACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226290 True 211 lncRNA 0.38 1 88474496 88474706

Neighbor

gene id symbol gene type direction distance location
mpped2 mppd2 coding upstream 85001 88363311 ~ 88389495 (+)
LOC110498955 LOC105030318 coding upstream 403601 88050098 ~ 88070895 (+)
wt-t1b wt1 coding upstream 508219 87946473 ~ 87966277 (+)
LOC110498941 ccdc73 coding upstream 542857 87912532 ~ 87931639 (+)
LOC118942948 ovch2 coding upstream 1120793 87351440 ~ 87353703 (+)
LOC110499106 LOC106561497 coding downstream 148663 88623369 ~ 88630357 (+)
LOC110499113 LOC106561499 coding downstream 187207 88661913 ~ 88667515 (+)
LOC110499119 LOC106573246 coding downstream 216721 88691427 ~ 88726701 (+)
bmt2 bmt2 coding downstream 264189 88738895 ~ 88750469 (+)
tmem168b LOC106561512 coding downstream 276062 88750768 ~ 88758734 (+)
G199883 NA non-coding upstream 463 88462591 ~ 88474033 (+)
G199871 NA non-coding upstream 43887 88430295 ~ 88430609 (+)
G199870 NA non-coding upstream 44300 88429859 ~ 88430196 (+)
G199808 NA non-coding upstream 128081 88346077 ~ 88346415 (+)
G200117 NA non-coding downstream 110955 88585661 ~ 88585904 (+)
G200146 NA non-coding downstream 131924 88606630 ~ 88607045 (+)
G200162 NA non-coding downstream 155778 88630484 ~ 88632486 (+)
G200218 NA non-coding downstream 254666 88729372 ~ 88729663 (+)
G200219 NA non-coding downstream 255520 88730226 ~ 88730445 (+)
G199223 hipk3 other upstream 606529 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 937568 87535936 ~ 87536928 (+)
G198784 NA other upstream 977761 87493623 ~ 87496735 (+)
G198575 NA other upstream 1324006 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1435260 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 945063 89395057 ~ 89422438 (+)
G202039 NA other downstream 1972412 90447118 ~ 90447573 (+)
G202185 NA other downstream 2242236 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2762319 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2891631 91366282 ~ 91543765 (+)

Expression


Co-expression Network