G200109


Basic Information

Item Value
gene id G200109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88565870 ~ 88568715 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU226522
AAAACGTGGGATTCAGataaaatatttacattttttttttacataagcaAAATGCACATATCAAATAATTATTAAACATTATTAACAACTAGATTCAATAGCACACCTTTTTCACAACATTCCAACATCCAAACTTTGTGGGACcaagaaaagaaaaacaaacattttctatTTGTGCTTGCATCACCCTTTACAATCCAGTAAGACATGGTAGTGAAAATACAAACCTCACAAAAATATTCACACATCAATGTACTTACAATACAACTTTTGACAATACGTAAAAATGGAAGCGAATTTTTGTTTTGGCTTTAGTCAAAAATTCCAAATGAAATTTGCATAGCATTTGTTTCTAAGAACACTCAGAGGATGAACAGCAACAACACTGGCAGATAATGGGGACCTTGTGAGGGGGAGCAACCAAAGTGGTGCCTCGTAGTAGCATAAGCCACTCTGAAAAAACTCCATCTTATTAGGGAATCAATTCTAGTCACTCCAATACAGCAACACTGAGGATCCCATTAACACTTGATGTAAATGGTCCTGGTGCTAATTCTCCAGAGTGAATGACTAGACACGCCAGCCTCTGTCTCAAAGCCATGCAGTCGCTCGGATTCCTTTCTAGACTGGGACCTTTCAGATGTGGGTCTACATGTCCAAAGTGCCTCTATAAGAGAAACACTGGGTTGAAACATTTCATGCAGGGATTGCGCTCCGTTTTGAGCTGAACAAAAGACAAACAAGCACGGTTGGGATACTGTTTGAAATGCTCATGAggtaatatataaaaaaaaataattctgtcAATAAGTTCACATTTTCCCAAGCAGAGCACCAAAAAATCCTATAAGCATCactgatttaaaaaaatcccTAACCAAAGCCTAGACCTTTTTGCTACCCGCTAGGTGCACAGAAAGGATGTGTTTTCATCAAAGTCTGAACAAGCTAGCAGCCAGGACCTAAACTCTGCACAGCCTCTATAGAAATCATGTTCATTAAAGGCATGCGTGTTACCACCGTTGTTATAAAAGTAGCAAGGCATCATTTGAAAGTTAAGCATAAAAAATATGTCCACCATGGTGTGTGCCTCTCCACTAAGAAAATGCACACAGGTCAagctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcagcacccacctgtagcacgcgctccagcaggtatatctctatggtcacccccaaaaccaattcttcctttggccgcctctccttccagttctctgctgccaatgactggaacaaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccatatgtcagagcagctcacagattactgcacctgtacatagcccatttataatttagcccaaacaactacctctccccctactgtatttattttgctcctttgcaccccattatttctctctactttgcacattcttccactgcaaatcaaccattccagtgttttacttgctatattgtatttacttcgccaacatggccttttttttgcctttacctcccttatctcacctcacttgttcacattgtatatagacttatttttctactgtattattgactgtatgtttgttttactccatgtgtaactctgcgttgttgtatgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacttggttaaataaaggtgaaataaaaaataaattaaaaaaagctCTATGCAGCTGAGTGAATGTATATCCAGTTATTGCTACTCAGTTTGGACCACATAAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTGATAAACTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTCATGAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTCATGAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACAGGTTTGACGTCTCATAAGATTTGTCATTTATTTATATGGTTGACTGTCTTTGCCTGTGATTGTAAACATACTCCTAATAAACACTGAAAATAGTAGAGTACTGAGTTGAAATTATTCAGGTTATTGAACTTTGACTGGGATTTTTATCTTGGGTTACCAGCACCCAGTATGGCCCAAGGCTATTAAATTCCAGTCCTGGAAGGGAGaaacatttcagttttttttgtttctATCTGGTAGTTAATTGTATTCAAGTGGTTTCCAGATCTGAattagaaggagaggatgaaaaaACAGAAGTATTTCATCCCTTCAGGACGGGAATTTAATAgccctgtaaggtctacactcttagaataaaaggttatgctatctagaacctaaaagggttcttcggctgtccccataggaggaccctttgaagaaccctttttggaaagTAGTGAGTTCCAACTATTATGTAATATGTCTGCCTAAAGATCTGAAATTACAGAAGTCCAAATTCTAACTTTAAATACATCTTCAAATACATAACCTCATATCAGTCTCCCATTGATGTCAATGGATGACTAACACAAAGGTATCTCAAGTTAGGATGTGTCCCAGCCACAGTGAGTATTATCTGACCCAGTGAGACTCATAGTGTGCACTCCAGTGATAAGTCCAGCACGGTGTTGTCATGGTGATCCTGGTTGCTGTTGGAGTCGCTGTCGTAGCTCTGAGTGCTGGCAGAGCAGTGGGCCGCTTCCTTTAGCTTCATCAGCATGTTCA
>TU226523
AAAACGTGGGATTCAGataaaatatttacattttttttttacataagcaAAATGCACATATCAAATAATTATTAAACATTATTAACAACTAGATTCAATAGCACACCTTTTTCACAACATTCCAACATCCAAACTTTGTGGGACcaagaaaagaaaaacaaacattttctatTTGTGCTTGCATCACCCTTTACAATCCAGTAAGACATGGTAGTGAAAATACAAACCTCACAAAAATATTCACACATCAATGTACTTACAATACAACTTTTGACAATACGTAAAAATGGAAGCGAATTTTTGTTTTGGCTTTAGTCAAAAATTCCAAATGAAATTTGCATAGCATTTGTTTCTAAGAACACTCAGAGGATGAACAGCAACAACACTGGCAGATAATGGGGACCTTGTGAGGGGGAGCAACCAAAGTGGTGCCTCGTAGTAGCATAAGCCACTCTGAAAAAACTCCATCTTATTAGGGAATCAATTCTAGTCACTCCAATACAGCAACACTGAGGATCCCATTAACACTTGATGTAAATGGTCCTGGTGCTAATTCTCCAGAGTGAATGACTAGACACGCCAGCCTCTGTCTCAAAGCCATGCAGTCGCTCGGATTCCTTTCTAGACTGGGACCTTTCAGATGTGGGTCTACATGTCCAAAGTGCCTCTATAAGAGAAACACTGGGTTGAAACATTTCATGCAGGGATTGCGCTCCGTTTTGAGCTGAACAAAAGACAAACAAGCACGGTTGGGATACTGTTTGAAATGCTCATGAggtaatatataaaaaaaaataattctgtcAATAAGTTCACATTTTCCCAAGCAGAGCACCAAAAAATCCTATAAGCATCactgatttaaaaaaatcccTAACCAAAGCCTAGACCTTTTTGCTACCCGCTAGGTGCACAGAAAGGATGTGTTTTCATCAAAGTCTGAACAAGCTAGCAGCCAGGACCTAAACTCTGCACAGCCTCTATAGAAATCATGTTCATTAAAGGCATGCGTGTTACCACCGTTGTTATAAAAGTAGCAAGGCATCATTTGAAAGTTAAGCATAAAAAATATGTCCACCATGGTGTGTGCCTCTCCACTAAGAAAATGCACACAGGTCAagctgctaggtaaagtccccccttatctcagctcgctggtcaccatagcagcacccacctgtagcacgcgctccagcaggtatatctctatggtcacccccaaaaccaattcttcctttggccgcctctccttccagttctctgctgccaatgactggaacaaactacaaaaatctctgaaactggaaacacttatctccctcactagctttaagcaccatatgtcagagcagctcacagattactgcacctgtacatagcccatttataatttagcccaaacaactacctctccccctactgtatttattttgctcctttgcaccccattatttctctctactttgcacattcttccactgcaaatcaaccattccagtgttttacttgctatattgtatttacttcgccaacatggccttttttttgcctttacctcccttatctcacctcacttgttcacattgtatatagacttatttttctactgtattattgactgtatgtttgttttactccatgtgtaactctgcgttgttgtatgtgtcgaactgctttgctttatcttggccaggtcgcaattgtaaatgagaacttgttctcaacttgcctacttggttaaataaaggtgaaataaaaaataaattaaaaaaagctCTATGCAGCTGAGTGAATGTATATCCAGTTATTGCTACTCAGTTTGGACCACATAAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTGATAAACTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTCATGAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACCGGTTTGACATCTCATGAGCTATAGCCTAGGTTAGGTCACAGTCAAGGCAACAGGTTTGACGTCTCATAAGATTTGTCATTTATTTATATGGTTGACTGTCTTTGCCTGTGATTGTAAACATACTCCTAATAAACACTGAAAATAGTAGAGTACTGAGTTGAAATTATTCAGGTTATTGAACTTTGACTGGGATTTTTATCTTGGGTTACCAGCACCCAGTATGGCCCAAGGCTATTAAATTCCAGTCCTGGAAGGGAGaaacatttcagttttttttgtttctATCTGGTAGTTAATTGTATTCAAGTGGTTTCCAGATCTGAattagaaggagaggatgaaaaaACAGAAGTATTTCATCCCTTCAGGACGGGAATTTAATAgccctgtaaggtctacactcttagaataaaaggttatgctatctagaacctaaaagggttcttcggctgtccccataggaggaccctttgaagaaccctttttggaaagTAGTGAGTTCCAACTATTATGTAATATGTCTGCCTAAAGATCTGAAATTACAGAAGTCCAAATTCTAACTTTAAATACATCTTCAAATACATAACCTCATATCAGTCTCCCATTGATGTCAATGGATGACTAACACAAAGGTATCTCAAGTTAGGATGTGTCCCAGCCACAGTGAGTATTATCTGACCCAGTGAGACTCATAGTGTGCACTCCAGTGATAAGTCCAGCACGGTGTTGTCATGGTGATCCTGGTTGCTGTTGGAGTCGCTGTCGTAGCTCTGAGTGCTGGCAGAGCAGTGGGCCGCTTCCTTTAGCTTCATCAGCATGTTCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226522 False 2794 lncRNA 0.40 2 88565870 88568715
TU226523 True 2794 lncRNA 0.40 2 88565870 88568715

Neighbor

gene id symbol gene type direction distance location
dnajc24 dnajc24 coding downstream 360397 88185028 ~ 88205473 (-)
LOC110498933 depdc7 coding downstream 654455 87907499 ~ 87911415 (-)
LOC110498926 hipk3 coding downstream 665445 87859357 ~ 87900425 (-)
kiaa1549la kiaa1549l coding downstream 711011 87802062 ~ 87854859 (-)
LOC110498902 LOC106561484 coding downstream 876258 87565328 ~ 87689612 (-)
LOC110499068 LOC106561495 coding upstream 636 88569351 ~ 88574203 (-)
LOC110499075 LOC106561496 coding upstream 61764 88630479 ~ 88656952 (-)
znf277 znf277 coding upstream 194843 88763558 ~ 88770972 (-)
LOC110533889 NA coding upstream 237373 88806088 ~ 88807501 (-)
LOC110499152 lrrn3 coding upstream 390657 88959372 ~ 88971921 (-)
G200041 NA non-coding downstream 86690 88478834 ~ 88479180 (-)
G200039 NA non-coding downstream 89544 88476063 ~ 88476326 (-)
G199948 NA non-coding downstream 242789 88322821 ~ 88323081 (-)
G199947 NA non-coding downstream 243217 88322083 ~ 88322653 (-)
G199935 NA non-coding downstream 269742 88295914 ~ 88296128 (-)
G200240 NA non-coding upstream 54679 88623394 ~ 88626242 (-)
G200253 NA non-coding upstream 87057 88655772 ~ 88711488 (-)
G200285 NA non-coding upstream 137905 88706620 ~ 88708459 (-)
G200492 NA non-coding upstream 210267 88778982 ~ 88781586 (-)
G200496 NA non-coding upstream 215316 88784031 ~ 88784251 (-)
G198912 NA other downstream 1239401 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 1661914 86903036 ~ 86903956 (-)
G197554 NA other downstream 2602205 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 2722377 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 3926114 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 1038122 89606837 ~ 89609890 (-)
G202279 NA other upstream 1808842 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 3020497 91589212 ~ 91591049 (-)
G204024 NA other upstream 3218472 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3829345 92398054 ~ 92443838 (-)

Expression


Co-expression Network