G200146


Basic Information

Item Value
gene id G200146
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 88606630 ~ 88607045 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU226562
acatgactgggaaaacagatatgcatctgttgatcacagataccttttaaaaacaaggtaggggcatggatacgaaaaccagtcagtatctggtgtgaccaccattgtcttacacgtcaatccagagcatcataaaacatgctaaatgggtgacatctctggtgagtatgcaggccatggaagaagtgggacattttcagtttccaggaattgtgtacaaacCCTTGCGACATGCAGCTGTGCATTAtcctgctgaaacatgaggtgatggcggtggatgaatggcacaacaatgggcctcaggatctcatcacagtgtctctgtacattcaaattgtcattgataaaatgtaattgtgttcgttgtccatagcttatgtctgcccataccataaccccactgccaccatgggggc

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU226562 True 416 lncRNA 0.45 1 88606630 88607045

Neighbor

gene id symbol gene type direction distance location
LOC110499041 LOC106561493 coding upstream 39565 88398637 ~ 88567065 (+)
mpped2 mppd2 coding upstream 217135 88363311 ~ 88389495 (+)
LOC110498955 LOC105030318 coding upstream 535735 88050098 ~ 88070895 (+)
wt-t1b wt1 coding upstream 640353 87946473 ~ 87966277 (+)
LOC110498941 ccdc73 coding upstream 674991 87912532 ~ 87931639 (+)
LOC110499106 LOC106561497 coding downstream 16324 88623369 ~ 88630357 (+)
LOC110499113 LOC106561499 coding downstream 54868 88661913 ~ 88667515 (+)
LOC110499119 LOC106573246 coding downstream 84382 88691427 ~ 88726701 (+)
bmt2 bmt2 coding downstream 131850 88738895 ~ 88750469 (+)
tmem168b LOC106561512 coding downstream 143723 88750768 ~ 88758734 (+)
G200117 NA non-coding upstream 20726 88585661 ~ 88585904 (+)
G199891 NA non-coding upstream 131924 88474496 ~ 88474706 (+)
G199883 NA non-coding upstream 132597 88462591 ~ 88474033 (+)
G199871 NA non-coding upstream 176021 88430295 ~ 88430609 (+)
G199870 NA non-coding upstream 176434 88429859 ~ 88430196 (+)
G200162 NA non-coding downstream 23439 88630484 ~ 88632486 (+)
G200218 NA non-coding downstream 122327 88729372 ~ 88729663 (+)
G200219 NA non-coding downstream 123181 88730226 ~ 88730445 (+)
G200331 NA non-coding downstream 171919 88778964 ~ 88781586 (+)
G200335 NA non-coding downstream 177217 88784262 ~ 88784585 (+)
G199223 hipk3 other upstream 738663 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1069702 87535936 ~ 87536928 (+)
G198784 NA other upstream 1109895 87493623 ~ 87496735 (+)
G198575 NA other upstream 1456140 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 1567394 87037511 ~ 87039236 (+)
LOC110499234 rbl2 other downstream 812724 89395057 ~ 89422438 (+)
G202039 NA other downstream 1840073 90447118 ~ 90447573 (+)
G202185 NA other downstream 2109897 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2629980 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2759292 91366282 ~ 91543765 (+)

Expression


Co-expression Network