G200714


Basic Information

Item Value
gene id G200714
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89043251 ~ 89044998 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227205
ggacagttgagaacaagttctcatttacaactgcgacctagccaataTGAAGccaagcagtgtgacaaaaacaacatttactcatgggataaacaaacgtacagtaaataacacaatagaaaagtctatgtacaatgtgtgcaaatgtagtaagattagggaagtAAGGCAATTGAggagaaataattacaatttagcattaacactggagtgatagatgtgcagatgatgtgcaagtagagatactgggtgcaaaaaataaataatatggaGATGAAGTTTGGCTGTGTTCAGgttacagtgatcggtaagctgctttgacagctgatgcttaaagttagtgagggagatataagtatGTGTGAGGTATTGAAAAAAACTggtatttgtggttgaatctgtgtttgaaagtcactgctcgactgagggatcttacagataattgtgtgtgcagggtacagagatgaggtagtcataaataatgttacactattattgcacacggtCGATTAACCCTATTATGTTACTTGTTAAGccaattttatttaatttttttccccTCCTGAACTtttttaggctttccataacaaaggtgttgaatacttattaactcaagacatttcaaattttcattttttattcatttgtaaaaaataaatgaattccactttgatattatgtggtattgtgtgtaggccagtgacaaaatattgatttaatccattttaaattcaggttgtaacacaacaaaaagtcaaggggtgggaatactttctgaaggtactgtatgatTCTTATCTAGTAGGCGCACTCTGTTACTGTGTGTACCTTTTGGCTTGGATTGGGTTGAGTGACCATAGTATGTAGTCACTGTGAGCACTGAACTGGTTCTCAGCAAATATCTCACTTAGAATATTGCTTATATTTTCCCCGATTGCTGCTCCTATCTAGTttgcatctctccctccctcccgctgctACCTCCAATGGGGTAAAGCCAAGGAGTTAAGGCCTGAGGCTAAACGCCCTGTGCGACCCCTCTGTGTGTGGGTTCCACTTGTCAGGTGATGGTGGATATCAGAATCTATAATTTAGCACATGATGCCTCCCAGAGGAGGCTGTGGTTCAAGAGCTGGTGACCCAAGTCTCCCAGCAGCACATCCACTGTCATGACGCCTTGAATAATCACATTTTCATGAATATTAAAGCTGCCCAGATATGAAATGCAGTCAGATCATTTTATTCTACCCTTAAAATCTACAACAACAAGGCAGATGTATCTCCATGCAGTCCAGACTCTCCCTGAAAACAAACCAATTTGCTCAATGAATTGTGTGAGTGGCTGGTGAACCATTACTTATGCACTGTAGGTTCACTGCATAATGTAAATGAACCAAAATCAATAGATCGAGGTTAATCTCATCTATGCTATATTTAAACCGTAAGAGCTAGTGGAGTGCGCTGGAGTCAAGGTGGTCTCACACCTCTGTGGTTGAAAGCCCCCAGCCCCAGTGCTTTTGAAGATAGCAGGATAGTCACCGCTGACATTTGGAGGTAGCGCTCTTCCAAGCGTAGGGGAATTGAATTTCAGATGGGCATCGCTCATAGCGCCATGGCCTGTGCTCAGTTTAGACATGTTGCAGCATGAATAACCAGTAAAGTGTAAAAGGAAATGGCTCAGACTCCCCAAACATCAGGCCCTGAAATCCTCCTTTAAGTGATTTTGACACAAAAATCCACTTTCCTCA

Function

NR:

description
PREDICTED: sestrin-2-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227205 True 1748 lncRNA 0.36 1 89043251 89044998

Neighbor

gene id symbol gene type direction distance location
LOC110499152 lrrn3 coding downstream 71330 88959372 ~ 88971921 (-)
LOC110533889 NA coding downstream 235750 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 272279 88763558 ~ 88770972 (-)
LOC110499075 LOC106561496 coding downstream 386299 88630479 ~ 88656952 (-)
LOC110499068 LOC106561495 coding downstream 469048 88569351 ~ 88574203 (-)
amfra LOC106561518 coding upstream 7772 89052770 ~ 89069349 (-)
nfatc3b LOC106561519 coding upstream 34927 89079925 ~ 89100055 (-)
dus2 dus2 coding upstream 55259 89100257 ~ 89106727 (-)
slc7a10b LOC106561521 coding upstream 61987 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 79308 89124306 ~ 89127179 (-)
G200496 NA non-coding downstream 259000 88784031 ~ 88784251 (-)
G200492 NA non-coding downstream 261665 88778982 ~ 88781586 (-)
G200253 NA non-coding downstream 331763 88655772 ~ 88711488 (-)
G200285 NA non-coding downstream 334792 88706620 ~ 88708459 (-)
G200240 NA non-coding downstream 417009 88623394 ~ 88626242 (-)
G200716 NA non-coding upstream 1386 89046384 ~ 89048900 (-)
G200724 NA non-coding upstream 26094 89071092 ~ 89071566 (-)
G200725 NA non-coding upstream 26962 89071960 ~ 89072223 (-)
G200726 NA non-coding upstream 27377 89072375 ~ 89072603 (-)
G200727 NA non-coding upstream 27908 89072906 ~ 89073123 (-)
G198912 NA other downstream 1716782 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2139295 86903036 ~ 86903956 (-)
G197554 NA other downstream 3079586 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3199758 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4403495 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 561839 89606837 ~ 89609890 (-)
G202279 NA other upstream 1332559 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2544214 91589212 ~ 91591049 (-)
G204024 NA other upstream 2742189 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3353062 92398054 ~ 92443838 (-)

Expression


Co-expression Network