G200652


Basic Information

Item Value
gene id G200652
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89046384 ~ 89048885 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227121
cttccacttcaCAAAATGGCAGAATAAGTCTCTGCAAATGCAAACAGGACTAGGTAATCTAGGTgcaaattatgtaaatatattgaTTAGATATTTCTCAAAATATTATGCTTAACACAGCGGTCAGATATCCAGCGTTAAACTATTAATAAGCTGTTGATTGGGTTTGCTCCGATTCCCAGTCTTGGTACACAATGAGAAAACAAGCAAAtatttttctcttctcttcttggcACTTTTCTCAGTGTGTGAATTCACCAGAACTCATAGCCGGAGACCCAGTGGACGCTCtttgtccaccaaagctgttgcatgttaatttctctaccataagccacctccaacgtcattttagacaattacgtccaaccggcctcacaaccagaccacatgtatggcggcGTGTGGGCAaccggtttgctgatgtcaacgttgtgaacagagtgccccatggtggtggtggggttatggtatgggcaggcataagctacggacaatgaacataattgcattttatctattcaatttgaatgcacagatactGTGACgacatcctgaggcccattgtcgtaacATTCATCTGACGCCATCACCTCACgttccagcatgataatgcacggccccatgtcacaaggatctgtacacaattcctggaagctgaaaatgtcccagttcttccatggcctgcacactcaccagacatgtcacccactgagcatgtttgggattctctggatcaaatgtgtacgacagcgcgtttcagttcctgccaatatccagcaacttcgcatagtgggacaacattccacaatcaacagcctgatcaactctatgcaaaggatgTGTCGCattgcatgaggcaaatagtcttcacaccagatactggactggttttctgatccacacccctacctttctTTTTCAaggtctgtgaccaacagatgcatatctgtattctcagtcattgAAATCTATAGATTAAGACCTActtcatttattttaattgactgattcccttgttcgaactcaataaaatctttgaaattgttgcatgttgcgtttatatttttgttcagtaaacctctacctccctctgaaTATGCCTCTCCTTTCGCTCTCTTACCTAAAGTCCTAAAACAATTTGAAAGGCCTTGCTGCCAGTCTTTAGAGAAGCTACAGAGGTGGCATGCATGGCTGACAGTTACAGACGGATGGTGACATACACATGCCTCGACTTCCCATGACCTTGGTTGACCTGGTTAGACATAGACAAACCATCAATCAGTCTCACTAGATGAAGGCCATTGTAACGGTGAGAGGTCAGGAGCTGTAGCATTCCTCATACAAAACACAAAATTAGGCTAGACCGCAGGAGATTCGCATTATAGCGCAattgacatttaaaggtaatttccgattgagccgacatatgtaGTGTTTACCGTTAAAGAGGTCTCCGCGAATGcaggaaaaaaacaaacattgcctttaaaaaggTGCATAGCTGAAAAAGAGCGATCATATTGAATCTGAATGCTCGTAAACCAGTTACATAAATTTTTGCTAGAAGCTTAATAGCCAGTAATAGGCTTTAAAATGAGTCATACCAGGGATGTGCTCAATACAACAGTCTCTACTGTAAAATATTGTTGTTCTGTTTAACCTGGGCATAGTGTATCATGAAGAGGGAGAATTTGAACCTCAATGATTGAGACAGTAAACGTTCCCTTGGAGACTAGTGTACTCTTACTGCCCTCTAGTGAAAAATTACAGTCACAGAGTACCATAGTAATATTGTATAGGGACCCAAACTGGTGGGGGGCAAAGAAGGTGAGAAGGTGGAAACTAGCGTGATGTGTAGAATAGAGCTATGCAGGATTTCAACTGGATGACCCATTTCAGGTTTAAAACCACCCATTTCTCCAACGAAGTGCCGTTGTAAAGAAAACACTACTGTTTCTAAAACAAGGCAAAGACCAAACAGGGTTACAGCATCTATAGTAGCT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227121 True 2006 lncRNA 0.37 2 89046384 89048885

Neighbor

gene id symbol gene type direction distance location
LOC110502274 immp2l coding upstream 65945 88815803 ~ 88980439 (+)
tmem168b LOC106561512 coding upstream 287650 88750768 ~ 88758734 (+)
bmt2 bmt2 coding upstream 295915 88738895 ~ 88750469 (+)
LOC110499119 LOC106573246 coding upstream 319683 88691427 ~ 88726701 (+)
LOC110499113 LOC106561499 coding upstream 378869 88661913 ~ 88667515 (+)
tdrd12 tdrd12 coding downstream 84048 89132933 ~ 89162092 (+)
ankrd27 ankrd27 coding downstream 119429 89168314 ~ 89202963 (+)
LOC110499234 rbl2 coding downstream 346172 89395057 ~ 89422438 (+)
snx20 snx20 coding downstream 421494 89470379 ~ 89472518 (+)
mphosph6 mphosph6 coding downstream 451627 89500512 ~ 89502349 (+)
G200651 NA non-coding upstream 1386 89044021 ~ 89044998 (+)
G200457 NA non-coding upstream 4617 88988936 ~ 89041767 (+)
G200372 NA non-coding upstream 202779 88843384 ~ 88843605 (+)
G200351 NA non-coding upstream 238313 88807845 ~ 88808071 (+)
G200335 NA non-coding upstream 261799 88784262 ~ 88784585 (+)
G200653 NA non-coding downstream 465 89049350 ~ 89049561 (+)
G200668 NA non-coding downstream 22651 89071536 ~ 89071845 (+)
G200669 NA non-coding downstream 23115 89072000 ~ 89072369 (+)
G200670 NA non-coding downstream 24914 89073799 ~ 89074036 (+)
G200671 NA non-coding downstream 25558 89074443 ~ 89074724 (+)
G199223 hipk3 other upstream 1178417 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1509456 87535936 ~ 87536928 (+)
G198784 NA other upstream 1549649 87493623 ~ 87496735 (+)
G198575 NA other upstream 1895894 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 2007148 87037511 ~ 87039236 (+)
G202039 NA other downstream 1398233 90447118 ~ 90447573 (+)
G202185 NA other downstream 1668057 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2188140 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2317452 91366282 ~ 91543765 (+)

Expression


Co-expression Network