G200716


Basic Information

Item Value
gene id G200716
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89046384 ~ 89048900 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227208
ACAAATACAATGCATAGCTACTATAGATGCTGTAACCCTGTTTGGTCTTTGCCTTGTTTTAGAAACAGTAGTGTTTTCTTTACAACGGCACTTCGTTGGAGAAATGGGTGGTTTTAAACCTGAAATGGGTCATCCAGTTGAAATCCTGCATAGCTCTATTCTACACATCACGCTAGTTTCCACCTTCTCACCTTCTTTGCCCCCCACCAGTTTGGGTCCCTATACAATATTACTATGGTACTCTGTGACTGTAATTTTTCACTAGAGGGCAGTAAGAGTACACTAGTCTCCAAGGGAACGTTTACTGTCTCAATCATTGAGGTTCAAATTCTCCCTCTTCATGATACACTATGCCCAGGTTAAACAGAACAACAATATTTTACAGTAGAGACTGTTGTATTGAGCACATCCCTGGTATGACTCATTTTAAAGCCTATTACTGGCTATTAAGCTTCTAGCAAAAATTTATGTAACTGGTTTACGAGCATTCAGATTCAATATGATCGCTCTTTTTCAGCTATGCAcctttttaaaggcaatgtttgtttttttcctgCATTCGCGGAGACCTCTTTAACGGTAAACACtacatatgtcggctcaatcggaaattacctttaaatgtcaatTGCGCTATAATGCGAATCTCCTGCGGTCTAGCCTAATTTTGTGTTTTGTATGAGGAATGCTACAGCTCCTGACCTCTCACCGTTACAATGGCCTTCATCTAGTGAGACTGATTGATGGTTTGTCTATGTCTAACCAGGTCAACCAAGGTCATGGGAAGTCGAGGCATGTGTATGTCACCATCCGTCTGTAACTGTCAGCCATGCATGCCACCTCTGTAGCTTCTCTAAAGACTGGCAGCAAGGCCTTTCAAATTGTTTTAGGACTTTAGGTAAGAGAGCGAAAGGAGAGGCATAttcagagggaggtagaggtttactgaacaaaaatataaacgcaacatgcaacaatttcaaagattttattgagttcgaacaagggaatcagtcaattaaaataaatgaagTAGGTCTTAATCTATAGATTTcaatgactgagaatacagatatgcatctgttggtcacagacctTGAAAAagaaaggtaggggtgtggatcagaaaaccagtccagtatctggtgtgaagactatttgcctcatgcaatGCGACAcatcctttgcatagagttgatcaggctgttgattgtggaatgttgtcccactatgcgaagttgctggatattggcaggaactgaaacgcgctgtcgtacacatttgatccagagaatcccaaacatgctcagtgggtgacatgtctggtgagtgtgcaggccatggaagaactgggacattttcagcttccaggaattgtgtacagatccttgtgacatggggccgtgcattatcatgctggaacGTGAGGTGATGGCGTCAGATGAATgttacgacaatgggcctcaggatgtcGTCACagtatctgtgcattcaaattgaatagataaaatgcaattatgttcattgtccgtagcttatgcctgcccataccataaccccaccaccaccatggggcactctgttcacaacgttgacatcagcaaaccggtTGCCCACACgccgccatacatgtggtctggttgtgaggccggttggacgtaattgtctaaaatgacgttggaggtggcttatggtagagaaattaacatgcaacagctttggtggacaaaGAGCGTCCACTGGGTCTCCGGCTATGAGTTCTGGTGAATTCACACACTGAGAAAAGTgccaagaagagaagagaaaaataTTTGCTTGTTTTCTCATTGTGTACCAAGACTGGGAATCGGAGCAAACCCAATCAACAGCTTATTAATAGTTTAACGCTGGATATCTGACCGCTGTGTTAAGCATAATATTTTGAGAAATATCTAAtcaatatatttacataatttgcACCTAGATTACCTAGTCCTGTTTGCATTTGCAGAGACTTATTCTGCCATTTTGtgaagtggaag

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227208 True 2021 lncRNA 0.44 2 89046384 89048900

Neighbor

gene id symbol gene type direction distance location
LOC110499152 lrrn3 coding downstream 74463 88959372 ~ 88971921 (-)
LOC110533889 NA coding downstream 238883 88806088 ~ 88807501 (-)
znf277 znf277 coding downstream 275412 88763558 ~ 88770972 (-)
LOC110499075 LOC106561496 coding downstream 389432 88630479 ~ 88656952 (-)
LOC110499068 LOC106561495 coding downstream 472181 88569351 ~ 88574203 (-)
amfra LOC106561518 coding upstream 3870 89052770 ~ 89069349 (-)
nfatc3b LOC106561519 coding upstream 31025 89079925 ~ 89100055 (-)
dus2 dus2 coding upstream 51357 89100257 ~ 89106727 (-)
slc7a10b LOC106561521 coding upstream 58085 89106985 ~ 89124165 (-)
LOC110499212 faap24 coding upstream 75406 89124306 ~ 89127179 (-)
G200714 NA non-coding downstream 1386 89043251 ~ 89044998 (-)
G200496 NA non-coding downstream 262133 88784031 ~ 88784251 (-)
G200492 NA non-coding downstream 264798 88778982 ~ 88781586 (-)
G200253 NA non-coding downstream 334896 88655772 ~ 88711488 (-)
G200285 NA non-coding downstream 337925 88706620 ~ 88708459 (-)
G200724 NA non-coding upstream 22192 89071092 ~ 89071566 (-)
G200725 NA non-coding upstream 23060 89071960 ~ 89072223 (-)
G200726 NA non-coding upstream 23475 89072375 ~ 89072603 (-)
G200727 NA non-coding upstream 24006 89072906 ~ 89073123 (-)
G200731 NA non-coding upstream 27776 89076676 ~ 89076887 (-)
G198912 NA other downstream 1719915 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2142428 86903036 ~ 86903956 (-)
G197554 NA other downstream 3082719 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3202891 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4406628 84596433 ~ 84910878 (-)
LOC110499346 vps4a other upstream 557937 89606837 ~ 89609890 (-)
G202279 NA other upstream 1328657 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2540312 91589212 ~ 91591049 (-)
G204024 NA other upstream 2738287 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 3349160 92398054 ~ 92443838 (-)

Expression


Co-expression Network