G200669


Basic Information

Item Value
gene id G200669
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89072000 ~ 89072369 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227139
tcctagccgtgtctgaatcctggcttaggaaggccaccaaaaattctgaaatttccatccccaactacaacattttccaacaagatatAACTGtcaaagggggcagagttgcaatctactgcagagatagcctgcagagttctgtcatactatccaggtctgtgcctaaacaattcaagcttctacttttaaaaatccacctttccagaaacaaccgttgccacttgttatagagccctctcagcccccagctgtgccctggacaccatatgtgaattgattgccccccatctatcttcagagttcgtactgttaggtgacctaaactgggatttGCTTAACACTCCGgttgtcctacaatctaagctag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227139 True 370 lncRNA 0.49 1 89072000 89072369

Neighbor

gene id symbol gene type direction distance location
LOC110502274 immp2l coding upstream 91561 88815803 ~ 88980439 (+)
tmem168b LOC106561512 coding upstream 313266 88750768 ~ 88758734 (+)
bmt2 bmt2 coding upstream 321531 88738895 ~ 88750469 (+)
LOC110499119 LOC106573246 coding upstream 345299 88691427 ~ 88726701 (+)
LOC110499113 LOC106561499 coding upstream 404485 88661913 ~ 88667515 (+)
tdrd12 tdrd12 coding downstream 60564 89132933 ~ 89162092 (+)
ankrd27 ankrd27 coding downstream 95945 89168314 ~ 89202963 (+)
LOC110499234 rbl2 coding downstream 322688 89395057 ~ 89422438 (+)
snx20 snx20 coding downstream 398010 89470379 ~ 89472518 (+)
mphosph6 mphosph6 coding downstream 428143 89500512 ~ 89502349 (+)
G200668 NA non-coding upstream 155 89071536 ~ 89071845 (+)
G200653 NA non-coding upstream 22439 89049350 ~ 89049561 (+)
G200652 NA non-coding upstream 23115 89046384 ~ 89048885 (+)
G200651 NA non-coding upstream 27002 89044021 ~ 89044998 (+)
G200457 NA non-coding upstream 30233 88988936 ~ 89041767 (+)
G200670 NA non-coding downstream 1430 89073799 ~ 89074036 (+)
G200671 NA non-coding downstream 2074 89074443 ~ 89074724 (+)
G200672 NA non-coding downstream 2993 89075362 ~ 89075569 (+)
G200678 NA non-coding downstream 16296 89088665 ~ 89092313 (+)
G200685 NA non-coding downstream 27290 89099659 ~ 89100034 (+)
G199223 hipk3 other upstream 1204033 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1535072 87535936 ~ 87536928 (+)
G198784 NA other upstream 1575265 87493623 ~ 87496735 (+)
G198575 NA other upstream 1921510 87150202 ~ 87150490 (+)
G198417 LOC106561459 other upstream 2032764 87037511 ~ 87039236 (+)
G202039 NA other downstream 1374749 90447118 ~ 90447573 (+)
G202185 NA other downstream 1644573 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 2164656 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 2293968 91366282 ~ 91543765 (+)

Expression


Co-expression Network