G201041


Basic Information

Item Value
gene id G201041
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89472539 ~ 89473610 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227566
gtgttaaatcaaaatatgttttatatatacgattcttcaaagtagccaccctttgccttgatgacagttttgaacactcctggcattctctcaaccagcttcatgaggaatgccattccaacagttttgaattAGTTCCTACATATgccgagcacttgttggctgctttttcttcactctgcggtccaactcatcccaaaccatctcaattgggttgaggttgggtgattgtggaggccaggtcatctgatcactgtccttcttggtcaaatagcccttacacagcctggaggtgtgttgggccattgtcctgttgaaaatcaaatgatagtctcactaagtgtgccttgaattctaaataaatcacctacagtatcaccatcacacctcctcctccatgcttcacggtgggagccacccatgcggagatcatccattcacataCTCTGCATCTTACAAAGACTCAgccgttggaaccaaaaatctcaaatttggactcatcagaccaaaggacagatctccaccggtctaatgtccattgcttgtctTTCTTGGACCAaggaagtctcttcttcttattggtgtcctttagtaggggtttctttgcatcaattcgacaatgaaggcctaattcacgcagtctctttgaacagttgatgttgagatgtatctgttacttcaactctgtgaagcatttatttgggctgcaatctgagttgcagttaactctaatgaacttatcctctgcagcagaggtaactctgggtcttccattcctgtggcagtcctcatgagagccagttttatcatagcgcttgatggtttttgcaactgcacttgaagaaactttagaaattcttgactgaccttcatgttttaaagtaatgatggactgtcatttctcttcacttatttgagctgttcttgccataatatggattggtattttaccaaatagggctatcttctgtataccattcCGATCTCAAAAGCATTGACAAAGGAAGAAATCC

Function

NR:

description
Transposable element Tc1 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU227566 True 1013 lncRNA 0.54 2 89472539 89473610

Neighbor

gene id symbol gene type direction distance location
snx20 snx20 coding upstream 21 89470379 ~ 89472518 (+)
LOC110499234 rbl2 coding upstream 50101 89395057 ~ 89422438 (+)
ankrd27 ankrd27 coding upstream 269576 89168314 ~ 89202963 (+)
tdrd12 tdrd12 coding upstream 310447 89132933 ~ 89162092 (+)
LOC110502274 immp2l coding upstream 492100 88815803 ~ 88980439 (+)
mphosph6 mphosph6 coding downstream 26902 89500512 ~ 89502349 (+)
LOC110499288 LOC106561532 coding downstream 81963 89555573 ~ 89577445 (+)
LOC110499364 LOC106561540 coding downstream 255330 89728940 ~ 89740218 (+)
LOC110499385 LOC106561542 coding downstream 298989 89772599 ~ 89793099 (+)
LOC110499409 LOC100380677 coding downstream 357312 89830922 ~ 89883245 (+)
G201071 NA non-coding upstream 13451 89458862 ~ 89459088 (+)
G201068 NA non-coding upstream 19144 89453149 ~ 89453395 (+)
G201061 NA non-coding upstream 29826 89442462 ~ 89442713 (+)
G201050 NA non-coding upstream 42121 89430141 ~ 89430418 (+)
G201044 NA non-coding upstream 44605 89427709 ~ 89427934 (+)
G201040 NA non-coding downstream 2380 89475990 ~ 89476606 (+)
G201045 NA non-coding downstream 33017 89506627 ~ 89508008 (+)
G201081 NA non-coding downstream 56139 89529749 ~ 89530222 (+)
G201082 NA non-coding downstream 56881 89530491 ~ 89530766 (+)
G201083 NA non-coding downstream 57276 89530886 ~ 89531363 (+)
G199223 hipk3 other upstream 1604572 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1935611 87535936 ~ 87536928 (+)
G198784 NA other upstream 1975804 87493623 ~ 87496735 (+)
G198575 NA other upstream 2322049 87150202 ~ 87150490 (+)
G202039 NA other downstream 973508 90447118 ~ 90447573 (+)
G202185 NA other downstream 1243332 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1763415 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1892727 91366282 ~ 91543765 (+)
G203414 NA other downstream 2148391 91622001 ~ 91624293 (+)

Expression


Co-expression Network