G201040


Basic Information

Item Value
gene id G201040
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89475990 ~ 89476606 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227565
tgagtatgatactgtttgtataattgtgtaatatggttttgtactgtttaatgaagaaaaatataatTCCCTTTTGATTTTAATTAAATCAGAGGatcgcccctgagcccagttagggtcagacatcctgggacagcccttttctgccattccgaataaaacccaactttgagaaatgatcaccagaccagactcaattacgagatggctaaaggttgtcttttaaccataccacgtggttaaactcttaagactattgataccgacagaataagaacaagtctttgatattgcttactagtctgcagctaggaatttggCATCATTGAACGCAAAGAACGACAACCgctgaaacatccattctataatgaATGTCACTTTAAaatatcccctctaaccaagacagagagagagagagggagatggacaaTTCTTCAAAATAAATACTTTTCACCAGcaatcaagacgacacactgagcgtaaatatatatgttgattgcaattgttcccgaatgagtgagtgttcatgtgtaaaggattagcattttaattgttataattattaactctgtagtgacttcttggtAAACCCcactccccttttgtctaacaagccg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU227565 True 617 lncRNA 0.44 1 89475990 89476606

Neighbor

gene id symbol gene type direction distance location
snx20 snx20 coding upstream 3472 89470379 ~ 89472518 (+)
LOC110499234 rbl2 coding upstream 53552 89395057 ~ 89422438 (+)
ankrd27 ankrd27 coding upstream 273027 89168314 ~ 89202963 (+)
tdrd12 tdrd12 coding upstream 313898 89132933 ~ 89162092 (+)
LOC110502274 immp2l coding upstream 495551 88815803 ~ 88980439 (+)
mphosph6 mphosph6 coding downstream 23906 89500512 ~ 89502349 (+)
LOC110499288 LOC106561532 coding downstream 78967 89555573 ~ 89577445 (+)
LOC110499364 LOC106561540 coding downstream 252334 89728940 ~ 89740218 (+)
LOC110499385 LOC106561542 coding downstream 295993 89772599 ~ 89793099 (+)
LOC110499409 LOC100380677 coding downstream 354316 89830922 ~ 89883245 (+)
G201041 NA non-coding upstream 2380 89472539 ~ 89473610 (+)
G201071 NA non-coding upstream 16902 89458862 ~ 89459088 (+)
G201068 NA non-coding upstream 22595 89453149 ~ 89453395 (+)
G201061 NA non-coding upstream 33277 89442462 ~ 89442713 (+)
G201050 NA non-coding upstream 45572 89430141 ~ 89430418 (+)
G201045 NA non-coding downstream 30021 89506627 ~ 89508008 (+)
G201081 NA non-coding downstream 53143 89529749 ~ 89530222 (+)
G201082 NA non-coding downstream 53885 89530491 ~ 89530766 (+)
G201083 NA non-coding downstream 54280 89530886 ~ 89531363 (+)
G201085 NA non-coding downstream 56757 89533363 ~ 89533603 (+)
G199223 hipk3 other upstream 1608023 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1939062 87535936 ~ 87536928 (+)
G198784 NA other upstream 1979255 87493623 ~ 87496735 (+)
G198575 NA other upstream 2325500 87150202 ~ 87150490 (+)
G202039 NA other downstream 970512 90447118 ~ 90447573 (+)
G202185 NA other downstream 1240336 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1760419 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1889731 91366282 ~ 91543765 (+)
G203414 NA other downstream 2145395 91622001 ~ 91624293 (+)

Expression


Co-expression Network