G201087


Basic Information

Item Value
gene id G201087
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89535492 ~ 89535873 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU227615
ccccaaatttcaccaggcttactgttcattaactcttggaagtgcttgcacaaaggatagtaacatctcatcctgtgttcttggaatctgAATACATGACCAAAACTATGTGGAcccctgctcatcaaacatctcattccaaaatcatggtcattaatatgaagttggccCCCCATTTGCTGCTACAGTATTTACCTGGTATATTTGCCATTAAGTAGTATGCTTTGAGTTTAACATGGATCTCTTCAAAAGTAAAATATTGTATTCCTGCTTAAGTTCAGAAACCTATTTATCTTTACCTTTAAATGGGCTTTTTCTAAAacagtgaattatttattttattctaaTTTCCAAATCAGATTGAATTTTTGCCGAGTATGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU227615 True 382 lncRNA 0.40 1 89535492 89535873

Neighbor

gene id symbol gene type direction distance location
mphosph6 mphosph6 coding upstream 33143 89500512 ~ 89502349 (+)
snx20 snx20 coding upstream 62974 89470379 ~ 89472518 (+)
LOC110499234 rbl2 coding upstream 113054 89395057 ~ 89422438 (+)
ankrd27 ankrd27 coding upstream 332529 89168314 ~ 89202963 (+)
tdrd12 tdrd12 coding upstream 373400 89132933 ~ 89162092 (+)
LOC110499288 LOC106561532 coding downstream 19700 89555573 ~ 89577445 (+)
LOC110499364 LOC106561540 coding downstream 193067 89728940 ~ 89740218 (+)
LOC110499385 LOC106561542 coding downstream 236726 89772599 ~ 89793099 (+)
LOC110499409 LOC100380677 coding downstream 295049 89830922 ~ 89883245 (+)
LOC110499418 LOC106561545 coding downstream 347484 89883357 ~ 89894419 (+)
G201086 NA non-coding upstream 2 89535201 ~ 89535490 (+)
G201085 NA non-coding upstream 1889 89533363 ~ 89533603 (+)
G201083 NA non-coding upstream 4129 89530886 ~ 89531363 (+)
G201082 NA non-coding upstream 4726 89530491 ~ 89530766 (+)
G201081 NA non-coding upstream 5270 89529749 ~ 89530222 (+)
G201142 NA non-coding downstream 87018 89622891 ~ 89716417 (+)
G201176 NA non-coding downstream 140088 89675961 ~ 89677325 (+)
G201235 NA non-coding downstream 271052 89806925 ~ 89807763 (+)
G201241 NA non-coding downstream 285900 89821773 ~ 89822363 (+)
G201243 NA non-coding downstream 287823 89823696 ~ 89876082 (+)
G199223 hipk3 other upstream 1667525 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 1998564 87535936 ~ 87536928 (+)
G198784 NA other upstream 2038757 87493623 ~ 87496735 (+)
G198575 NA other upstream 2385002 87150202 ~ 87150490 (+)
G202039 NA other downstream 911245 90447118 ~ 90447573 (+)
G202185 NA other downstream 1181069 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1701152 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1830464 91366282 ~ 91543765 (+)
G203414 NA other downstream 2086128 91622001 ~ 91624293 (+)

Expression


Co-expression Network