Gene
RNA
| Item | Value |
|---|---|
| gene id | G201540 |
| gene name | LOC106561532 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89558299 ~ 89559038 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| transcription initiation factor TFIID subunit 4-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU228126 | True | 286 | lncRNA | 0.46 | 3 | 89558299 | 89559038 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| lsm14aa | LOC106561533 | coding | downstream | 2944 | 89538498 ~ 89555355 (-) |
| gpia | LOC100196524 | coding | downstream | 29495 | 89506624 ~ 89528804 (-) |
| hsd17b2 | hsd17b2 | coding | downstream | 52314 | 89502075 ~ 89505985 (-) |
| LOC110499252 | papd5 | coding | downstream | 65129 | 89477010 ~ 89493170 (-) |
| LOC110502285 | sall1 | coding | downstream | 114655 | 89437266 ~ 89443782 (-) |
| LOC110499327 | LOC106561534 | coding | upstream | 18756 | 89577794 ~ 89587145 (-) |
| LOC110499346 | vps4a | coding | upstream | 48216 | 89606837 ~ 89609890 (-) |
| LOC110499336 | LOC106561536 | coding | upstream | 51199 | 89610237 ~ 89709230 (-) |
| LOC118944147 | NA | coding | upstream | 88424 | 89647462 ~ 89647514 (-) |
| tph2 | tph2 | coding | upstream | 181151 | 89740189 ~ 89748145 (-) |
| G201515 | NA | non-coding | downstream | 90151 | 89463194 ~ 89468148 (-) |
| G201506 | NA | non-coding | downstream | 106648 | 89451242 ~ 89451651 (-) |
| G201489 | NA | non-coding | downstream | 127008 | 89431061 ~ 89431291 (-) |
| G201485 | NA | non-coding | downstream | 135927 | 89420497 ~ 89422372 (-) |
| G201544 | NA | non-coding | upstream | 14916 | 89573954 ~ 89577425 (-) |
| G201561 | NA | non-coding | upstream | 35554 | 89594592 ~ 89595015 (-) |
| G201627 | NA | non-coding | upstream | 116993 | 89676031 ~ 89677465 (-) |
| G201667 | LOC106561542 | non-coding | upstream | 216461 | 89775499 ~ 89777092 (-) |
| G201664 | LOC106561542 | non-coding | upstream | 220064 | 89779102 ~ 89780286 (-) |
| G198912 | NA | other | downstream | 2231830 | 87322139 ~ 87326469 (-) |
| G198342 | LOC100194703 | other | downstream | 2654343 | 86903036 ~ 86903956 (-) |
| G197554 | NA | other | downstream | 3594634 | 85959845 ~ 85963665 (-) |
| G197498 | slc25a18 | other | downstream | 3714806 | 85831239 ~ 85843493 (-) |
| LOC110498022 | LOC106561385 | other | downstream | 4918543 | 84596433 ~ 84910878 (-) |
| G202279 | NA | other | upstream | 818519 | 90377557 ~ 90441425 (-) |
| G203915 | rassf9 | other | upstream | 2030174 | 91589212 ~ 91591049 (-) |
| G204024 | NA | other | upstream | 2228149 | 91787187 ~ 91788103 (-) |
| LOC110499897 | LOC106573100 | other | upstream | 2839022 | 92398054 ~ 92443838 (-) |
