G201544


Basic Information

Item Value
gene id G201544
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89573954 ~ 89577425 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU228132
tttattattgtttttttttgcaaaggTACAAACAATACTAAAATTGCATCACCTGAAATGCGTCAGGTTTGAATGCACAGACAGTAGGAAATATAAATAGTCACAAAAATGTGTCCTTCAACACATAATACAGTAGCTGGGTTCTTAAGACCCAGACTCTAAACTTGAATATACATACACCACAGCTTTATTTCATTTATCAATTAGAACTATGCACTATATAAACAAATGCATGTTacagtaaaaaatacatttaaagcaTTAAAAACCTTTCATGGACAGTCATTTCAAAGTCAAACTGAAAAAGGGCTtttgacccccccaaaaaaataaggAAGCAGTAGTATCCCATTAGCAttctaaaaaaatatttgacagaTCGCCGCGACAGATTGACATTTTGATGTTGATCATCAGCATTAAAAGTCAATCACTCAATAGATATTGTTAAGCGGTGCTGAAACTTCTGCAAGTGATGGACTTTTCAGTTGATTAAAAAGTCCCGGATGGAATTTCCGGTCTTGAGAAAACTATATAGGAATGGTGCTCAATATTATGACCGCATTGTTAATTGTCATCTTCATTCAAATGGTTGATTAGCCTGAGTGAGTGTATAAGAGAGCCAGCTCCCTGTGTTCTGTGATGAGGTTGAATCTGAATAATGATACTTATATCTTTAAATGGATCCTGGTAATTCATCTAGATTCACGTCTACAATAGGAGAGATTAGTTTATGTTATGAACCATTGGATAGAATATTAGAATTGgctcacaatttttttttaacacacaaaaaaacaaaacaaaaaaatcttaAGATGTTTCACTCTTCTGCCAATAGTAATAGGAACCCTAAAGTACCATGTATACCAGCCAAACCTGGGTCAAATACTTGCAAGTAATTAAGGTGGGCTTGATTTAGCTTGGCGTTTGCATTTAAAAATGGGACTATTCCATAGGTTCTGTTGTACCAGGCAATCTAAATCGAGCTCATATTTCATATTTGAAAGTATTGGATCCAGGTCTGGAACTAGTATGTATACACGTTGCGTTTTAATAGCAGGCATCACAGTACTTCCTGGTACATTTATCTGACCACTATCAAAACAATAGGATTCTCTTCAACATTCATCTTATGGTTTGGTAAATTAAAAGGTAGACTCAAAGAAATGATCTTGCCACGAAcagcagatattgagatgagcaagatgcagtcatacagtatctgcgcatgtgcacgGGTTCGCTTCACGCTGTTCAAAGCATGGTAGCCAAGGGACCAAAACAGTGGAGAAGTTGAGCCTCACGCgtcaacgctcttagttgttgaGGAAATTGACCCACCGCGGTTCACTTTCTGCATCTgtgtcatatcgctgagtctacctttaaaacaTGTTACAATATgagttgttttttccccccaaacTCAGTACTTGCCCAGAACATAAAATGCAAACATTATCTTTCATTTTGAAATGGTTCCTTCCTCTTCAATATGTTGGGGAAAACGTACATAACACAGATCAGTGTTTGTAGGCTTtgacctggggcctcatttatcaaaggTGTGTGCGCACAGAAAAATGACTAAACCTTGTGTGGGCCACTTTTTCCACAAAGGTTGGtatttatccattttgaatttgaaGTGCATCTCCACGTAAATCTCAGACCATGCGTAGGTGCAACTTCTAATGGTCGATCAACTGTATTGCAAGCAAAGATTGCTATTTTGGGGAAATTGAGGTGTTTGATGCACAGGAATTATAATAATGGCTACCATTTATTCATTGCTCATTCAATAGCCAACCATGCTCAAAAGCAAATAGGCTGGTAACCTATGACAGTATGGGTAGTCTTCAGTATTGCTGTGCGATAGGAGTGTGATGTCATAGCCTATTTAATCTCAGAAACACAATGTATTGATAAACAaaatattgaacaacaattcATGTGGGCTGTAGGCAACATTTACTTTTAAATTGTTCAATAGACAATCAATCTTGCAGAATGCACGACCAGTGTTTGGTACTCGCAATAGGCAGaatgcatttttattttcaaaagaCTCTGCAAAAGATTAAAACATTCTGCCCACACCTCTACAAAAATGTAATCAAATTTGCTATTCAGCTTTCTTTTAGAAAAGGACATGGCCCAGTTCCAACATCTCCAAATCATACAGCTAATGAGGGCATtttgttaaaaatatataatgtAATTTGGTTCTGATTTATCACTGAAAACATGCGTATGTGTTGCATGGGACAGTTTGTAGGATTTATCAATCTCCAAGTATGCCAGAAATCCTACAATCTCCAAGTATGCCAGAAATCCTACAATCTCCAGGTATGCCAGAATGTAGCAAGAAATGTACGCACAGTTGATAAATAAGGCCCCTGGAGAGCACAGATCCTGACCACGGTGACCAAACAATCCTGTTGgtccaagggttagggttagtctaaaTATGATGTGATGTAACATCCTTAGTGGCAAATCATTAGGCTTAAATAGCAAGGACCCCGACATAAACTAAATACTACTGTAGGTTGTTTGAGAACGACGCAACAAGTGGGGTTGCTTAGCTTCAGATGCAAGGGGTGATATATGATAGTGTGGTATGGGAATGAGGGTGAGTGTAGAGATGGGGGGGGTTATTTGATAATGCAGAATGGGAATGAAGGCATGTGTAGAGATGGGGGCAAAGGGGAAACTTTACTTATCACAAATGTGTTATGGGCATAGTACAAAGCCCTGTGTTACCCCTACATTAGGAGAGCCTTATCGAGTAGTAAGGATTTGCATCAGGTCGAGTACAGAACCATTGTGGACGCCCTACTTCAGGAGAGTTGTGTAGAACAGTAAAGATTTGTATTGGGTCGACTAGAGAACCCTTATGGATTTGTAACGGGCCGGCTAAGTACTAAACCCTGTAGGACGTCATACTTCAGGAGAGCTGTGAAGAACCGTAAGGATTTGTAATGGGCTGAGTACTGAACCTTGTGGTACCCCCACTACTTCAGGAGAGCTGTGTAGAACAGTAAGAATGTGTAATTAACTGAGTACTGAACCCTGGGGGACTTCACTACTTCAGGAGAGCTTTATAAAGCAATAAGGACCTGGATGTGGCCCTCTCCTGCTCCAGGCAGAAGATAAAGTCCCTGAGGTTGACTCGCGTGATCCGCTGACGGAGCTGTTGGCGGGAGGAGGCAGCTGTGGAAGAGCCATCCCCTGAACCCGAAGC

Function

NR:

description
PREDICTED: transcription initiation factor TFIID subunit 4-like

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU228132 True 3250 lncRNA 0.53 2 89573954 89577425

Neighbor

gene id symbol gene type direction distance location
lsm14aa LOC106561533 coding downstream 18599 89538498 ~ 89555355 (-)
gpia LOC100196524 coding downstream 45150 89506624 ~ 89528804 (-)
hsd17b2 hsd17b2 coding downstream 67969 89502075 ~ 89505985 (-)
LOC110499252 papd5 coding downstream 80784 89477010 ~ 89493170 (-)
LOC110502285 sall1 coding downstream 130310 89437266 ~ 89443782 (-)
LOC110499327 LOC106561534 coding upstream 369 89577794 ~ 89587145 (-)
LOC110499346 vps4a coding upstream 29829 89606837 ~ 89609890 (-)
LOC110499336 LOC106561536 coding upstream 32812 89610237 ~ 89709230 (-)
LOC118944147 NA coding upstream 70037 89647462 ~ 89647514 (-)
tph2 tph2 coding upstream 162764 89740189 ~ 89748145 (-)
G201540 LOC106561532 non-coding downstream 14916 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 105806 89463194 ~ 89468148 (-)
G201506 NA non-coding downstream 122303 89451242 ~ 89451651 (-)
G201489 NA non-coding downstream 142663 89431061 ~ 89431291 (-)
G201561 NA non-coding upstream 17167 89594592 ~ 89595015 (-)
G201627 NA non-coding upstream 98606 89676031 ~ 89677465 (-)
G201667 LOC106561542 non-coding upstream 198074 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 201677 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 204369 89781794 ~ 89785665 (-)
G198912 NA other downstream 2247485 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2669998 86903036 ~ 86903956 (-)
G197554 NA other downstream 3610289 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3730461 85831239 ~ 85843493 (-)
LOC110498022 LOC106561385 other downstream 4934198 84596433 ~ 84910878 (-)
G202279 NA other upstream 800132 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 2011787 91589212 ~ 91591049 (-)
G204024 NA other upstream 2209762 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2820635 92398054 ~ 92443838 (-)

Expression


Co-expression Network