G201627



Basic Information


Item Value
gene id G201627
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 89676031 ~ 89677465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU228228
GTTTGCTTGAATTCCGCGGTCCGGTTCCCTTTAAGGCAATGTGAACGCAAAGCTCCCCAGGTTCGCTTGTCATTATTCCCGcaccacacactagactactgcaacaccattCCATCCACTccctgcaacactgtttcccctgacataagcccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgccacactgtttcccctgccataacccctcacactagactactgcaacactgtttcccctgccataacccctcacactagactactgcaacactgtttcccctgccataacccctcacactagactactgtaacactgtttcccctgccataaaccctcacactagactactgtaacactgtttcccctgccataaaccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgtaacaccgtttcccctgccacaaaccctcacactagactactgtaatactgtttcccctgccataaaccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgtaacaccgtttcccctgccataaaccctcacactagactactgtaacactgtttcccctgccataaaccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgcaacactgtttcccctgccataacccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactacaaCAATGTTTCCCCTGACATAagcccctcacactagactactgcaacactgtttcccctgccataaaccctcacactagactactgtaacaccgtttcccctgc

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU228228 True 962 lncRNA 0.50 2 89676031 89677465

Neighbor


gene id symbol gene type direction distance location
LOC118944147 NA coding downstream 28517 89647462 ~ 89647514 (-)
LOC110499346 vps4a coding downstream 67453 89606837 ~ 89609890 (-)
LOC110499327 LOC106561534 coding downstream 88886 89577794 ~ 89587145 (-)
lsm14aa LOC106561533 coding downstream 120676 89538498 ~ 89555355 (-)
gpia LOC100196524 coding downstream 147227 89506624 ~ 89528804 (-)
tph2 tph2 coding upstream 62724 89740189 ~ 89748145 (-)
LOC110499378 LOC106561541 coding upstream 74278 89751743 ~ 89763372 (-)
LOC110499401 lgr5 coding upstream 115654 89793119 ~ 89820854 (-)
LOC110499439 LOC106561546 coding upstream 224042 89901507 ~ 89922720 (-)
LOC110499460 LOC100136366 coding upstream 367231 90044696 ~ 90125003 (-)
G201561 NA non-coding downstream 81016 89594592 ~ 89595015 (-)
G201544 NA non-coding downstream 98606 89573954 ~ 89577425 (-)
G201540 LOC106561532 non-coding downstream 116993 89558299 ~ 89559038 (-)
G201515 NA non-coding downstream 207883 89463194 ~ 89468148 (-)
G201506 NA non-coding downstream 224380 89451242 ~ 89451651 (-)
G201667 LOC106561542 non-coding upstream 98034 89775499 ~ 89777092 (-)
G201664 LOC106561542 non-coding upstream 101637 89779102 ~ 89780286 (-)
G201673 LOC106561542 non-coding upstream 104329 89781794 ~ 89785665 (-)
G201671 LOC106561542 non-coding upstream 111421 89788886 ~ 89789501 (-)
G201697 NA non-coding upstream 154689 89832154 ~ 89833151 (-)
G198912 NA other downstream 2349562 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 2772075 86903036 ~ 86903956 (-)
G197554 NA other downstream 3712366 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 3832538 85831239 ~ 85843493 (-)
G202279 NA other upstream 700092 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1911747 91589212 ~ 91591049 (-)
G204024 NA other upstream 2109722 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2720595 92398054 ~ 92443838 (-)
G205192 NA other upstream 3284579 92962044 ~ 92962934 (-)

Expression



Co-expression Network