Gene
RNA
| Item | Value |
|---|---|
| gene id | G201671 |
| gene name | LOC106561542 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 89788886 ~ 89789501 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| zinc finger C3H1 domain-containing protein-like isoform X3 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU228281 | True | 259 | lncRNA | 0.45 | 2 | 89788886 | 89789501 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110499378 | LOC106561541 | coding | downstream | 25514 | 89751743 ~ 89763372 (-) |
| tph2 | tph2 | coding | downstream | 40741 | 89740189 ~ 89748145 (-) |
| LOC110499336 | LOC106561536 | coding | downstream | 79656 | 89610237 ~ 89709230 (-) |
| LOC118944147 | NA | coding | downstream | 141372 | 89647462 ~ 89647514 (-) |
| LOC110499346 | vps4a | coding | downstream | 180308 | 89606837 ~ 89609890 (-) |
| LOC110499401 | lgr5 | coding | upstream | 3618 | 89793119 ~ 89820854 (-) |
| LOC110499439 | LOC106561546 | coding | upstream | 112006 | 89901507 ~ 89922720 (-) |
| LOC110499460 | LOC100136366 | coding | upstream | 255195 | 90044696 ~ 90125003 (-) |
| LOC110502310 | st7 | coding | upstream | 407730 | 90197231 ~ 90298528 (-) |
| LOC110499482 | LOC100380720 | coding | upstream | 511045 | 90300546 ~ 90321779 (-) |
| G201673 | LOC106561542 | non-coding | downstream | 3221 | 89781794 ~ 89785665 (-) |
| G201664 | LOC106561542 | non-coding | downstream | 8600 | 89779102 ~ 89780286 (-) |
| G201667 | LOC106561542 | non-coding | downstream | 11794 | 89775499 ~ 89777092 (-) |
| G201627 | NA | non-coding | downstream | 111421 | 89676031 ~ 89677465 (-) |
| G201561 | NA | non-coding | downstream | 193871 | 89594592 ~ 89595015 (-) |
| G201697 | NA | non-coding | upstream | 42653 | 89832154 ~ 89833151 (-) |
| G201700 | LOC100380677 | non-coding | upstream | 83486 | 89872987 ~ 89874011 (-) |
| G201699 | NA | non-coding | upstream | 93313 | 89882814 ~ 89883238 (-) |
| G201733 | NA | non-coding | upstream | 105922 | 89895423 ~ 89895933 (-) |
| G201734 | NA | non-coding | upstream | 106466 | 89895967 ~ 89896274 (-) |
| G198912 | NA | other | downstream | 2462417 | 87322139 ~ 87326469 (-) |
| G198342 | LOC100194703 | other | downstream | 2884930 | 86903036 ~ 86903956 (-) |
| G197554 | NA | other | downstream | 3825221 | 85959845 ~ 85963665 (-) |
| G197498 | slc25a18 | other | downstream | 3945393 | 85831239 ~ 85843493 (-) |
| G202279 | NA | other | upstream | 588056 | 90377557 ~ 90441425 (-) |
| G203915 | rassf9 | other | upstream | 1799711 | 91589212 ~ 91591049 (-) |
| G204024 | NA | other | upstream | 1997686 | 91787187 ~ 91788103 (-) |
| LOC110499897 | LOC106573100 | other | upstream | 2608559 | 92398054 ~ 92443838 (-) |
| G205192 | NA | other | upstream | 3172543 | 92962044 ~ 92962934 (-) |
