G201345



Basic Information


Item Value
gene id G201345
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90008517 ~ 90008904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU227912
TTTAGATTTGACTTTAGTTCGTTTTGGAGTCAAAGATAATAGTTTTAGTTTTTCATACAGGTCTGTTATTTATTGTTTTTCAGTTTACCACTCTTTTTTCATAATTCGTTTTCATTTTTGTTTCagtttactataataaccttggaacacacacatagagacaaaAGCGGCACACACACTTAAAtatcccccctcccacacactccCTCATTCACCCTGCCAACCTCTCATACATACACCCTCGCCCACTCCAACCCTCAACAACTACCTCTCctggaatagagaaagagagggagaataagagagagagtgagtaagagagagagagggtgagtaagag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU227912 True 340 lncRNA 0.46 2 90008517 90008904

Neighbor


gene id symbol gene type direction distance location
LOC110499430 LOC106561547 coding upstream 79016 89924291 ~ 89929501 (+)
LOC110499418 LOC106561545 coding upstream 114098 89883357 ~ 89894419 (+)
LOC110499409 LOC100380677 coding upstream 125272 89830922 ~ 89883245 (+)
LOC110499385 LOC106561542 coding upstream 215418 89772599 ~ 89793099 (+)
LOC110499364 LOC106561540 coding upstream 268299 89728940 ~ 89740218 (+)
asz1 LOC106561550 coding downstream 121636 90130540 ~ 90170115 (+)
wnt2 LOC106561551 coding downstream 174377 90183281 ~ 90196936 (+)
cpa5 cbpa1 coding downstream 569016 90577920 ~ 90594338 (+)
LOC110499537 LOC106561558 coding downstream 585546 90594450 ~ 90599294 (+)
poc1b poc1b coding downstream 598186 90607090 ~ 90667412 (+)
G201322 NA non-coding upstream 48646 89958385 ~ 89959871 (+)
G201287 NA non-coding upstream 98234 89910081 ~ 89910283 (+)
G201275 NA non-coding upstream 101326 89906770 ~ 89907191 (+)
G201268 NA non-coding upstream 109196 89899102 ~ 89899321 (+)
G201267 NA non-coding upstream 109547 89898732 ~ 89898970 (+)
G201349 NA non-coding downstream 5872 90014776 ~ 90015047 (+)
G201279 NA non-coding downstream 26049 90034953 ~ 90035952 (+)
G201379 LOC100136366 non-coding downstream 60386 90069290 ~ 90070243 (+)
G201848 NA non-coding downstream 121864 90130768 ~ 90130971 (+)
G201851 NA non-coding downstream 127237 90136141 ~ 90136370 (+)
LOC110499234 rbl2 other upstream 586079 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2140550 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2471589 87535936 ~ 87536928 (+)
G198784 NA other upstream 2511782 87493623 ~ 87496735 (+)
G198575 NA other upstream 2858027 87150202 ~ 87150490 (+)
G202039 NA other downstream 438214 90447118 ~ 90447573 (+)
G202185 NA other downstream 708038 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1228121 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1357433 91366282 ~ 91543765 (+)
G203414 NA other downstream 1613097 91622001 ~ 91624293 (+)

Expression



Co-expression Network