G201804


Basic Information

Item Value
gene id G201804
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90023044 ~ 90055065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU228442
cacagtggcctccatcattctttattggaagaagtttggaaccaccaagactcttcctagagctggctgcctggccaaactaagcaatcggggaagaagggccttggtcagggaggtaaccaagaacctaATGGTCACTCAGACTgaaactgcccaaatacaggtgtgccaagcttgtagcgtcatacccaagaagcctcgaggctgtaattgctgccaaaggtacttcaacaaagtactgagtaaagggtctgaatagttatgtaaatgtgattttttaacttgtattttaatacattttcaaaaatgtatgCGGTGTTGTATGTAGAATGGGGAAATGATGacttaatcagttttagaatgaggctgtaatgtaacaaaaggtggaaaaagtcaaggggtctgaatactttcccaatgcactttAGAAC

Function

NR:

description
Transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU228442 True 431 lncRNA 0.42 2 90023044 90055065

Neighbor

gene id symbol gene type direction distance location
LOC110499439 LOC106561546 coding downstream 100324 89901507 ~ 89922720 (-)
LOC110499401 lgr5 coding downstream 202190 89793119 ~ 89820854 (-)
LOC110499378 LOC106561541 coding downstream 259672 89751743 ~ 89763372 (-)
tph2 tph2 coding downstream 274899 89740189 ~ 89748145 (-)
LOC110499336 LOC106561536 coding downstream 313814 89610237 ~ 89709230 (-)
LOC110502310 st7 coding upstream 142166 90197231 ~ 90298528 (-)
LOC110499482 LOC100380720 coding upstream 245481 90300546 ~ 90321779 (-)
met LOC106561553 coding upstream 283078 90338143 ~ 90427147 (-)
cav1 LOC106561554 coding upstream 398631 90453696 ~ 90463528 (-)
cav2 LOC106561555 coding upstream 409621 90464686 ~ 90470189 (-)
G201735 NA non-coding downstream 123109 89899650 ~ 89899935 (-)
G201734 NA non-coding downstream 126770 89895967 ~ 89896274 (-)
G201733 NA non-coding downstream 127111 89895423 ~ 89895933 (-)
G201699 NA non-coding downstream 139806 89882814 ~ 89883238 (-)
G202227 NA non-coding upstream 123219 90178284 ~ 90178513 (-)
G202233 LOC106561551 non-coding upstream 129256 90184321 ~ 90184541 (-)
G202239 LOC106561551 non-coding upstream 135792 90190857 ~ 90191116 (-)
G202240 NA non-coding upstream 138271 90193336 ~ 90193617 (-)
G202247 NA non-coding upstream 182503 90237568 ~ 90241681 (-)
LOC110499346 vps4a other downstream 413154 89606837 ~ 89609890 (-)
G198912 NA other downstream 2696575 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 3119088 86903036 ~ 86903956 (-)
G197554 NA other downstream 4059379 85959845 ~ 85963665 (-)
G197498 slc25a18 other downstream 4179551 85831239 ~ 85843493 (-)
G202279 NA other upstream 322492 90377557 ~ 90441425 (-)
G203915 rassf9 other upstream 1534147 91589212 ~ 91591049 (-)
G204024 NA other upstream 1732122 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 2342995 92398054 ~ 92443838 (-)
G205192 NA other upstream 2906979 92962044 ~ 92962934 (-)

Expression


Co-expression Network