G201888


Basic Information

Item Value
gene id G201888
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90184621 ~ 90184836 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU228549
aaattatactgaacaaaaatataaacacaacatgcaaccatttcaaatattttactgagttacagttcatatgaggaaatcaatcaattgaaataaattcattaggccctatgGATTACACAACTGGGATTACAGATATAAATCTattagtcacagataccttaaaagaaatgggcctcacaatgggcctcacaatgggcctcaggatctcttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228549 True 216 lncRNA 0.34 1 90184621 90184836

Neighbor

gene id symbol gene type direction distance location
asz1 LOC106561550 coding upstream 14506 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 140797 89937146 ~ 90043824 (+)
LOC110499430 LOC106561547 coding upstream 255120 89924291 ~ 89929501 (+)
LOC110499418 LOC106561545 coding upstream 290202 89883357 ~ 89894419 (+)
LOC110499409 LOC100380677 coding upstream 301376 89830922 ~ 89883245 (+)
cpa5 cbpa1 coding downstream 393084 90577920 ~ 90594338 (+)
LOC110499537 LOC106561558 coding downstream 409614 90594450 ~ 90599294 (+)
poc1b poc1b coding downstream 422254 90607090 ~ 90667412 (+)
dusp6 dus6 coding downstream 516577 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 608412 90793248 ~ 90868325 (+)
G201851 NA non-coding upstream 48251 90136141 ~ 90136370 (+)
G201848 NA non-coding upstream 53650 90130768 ~ 90130971 (+)
G201379 LOC100136366 non-coding upstream 114378 90069290 ~ 90070243 (+)
G201279 NA non-coding upstream 148669 90034953 ~ 90035952 (+)
G201349 NA non-coding upstream 169574 90014776 ~ 90015047 (+)
G201892 NA non-coding downstream 3919 90188755 ~ 90188962 (+)
G201893 NA non-coding downstream 4246 90189082 ~ 90189469 (+)
G201895 NA non-coding downstream 8639 90193475 ~ 90193794 (+)
G201896 NA non-coding downstream 9674 90194510 ~ 90194758 (+)
G201886 NA non-coding downstream 18043 90202879 ~ 90206418 (+)
LOC110499234 rbl2 other upstream 762183 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2316654 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2647693 87535936 ~ 87536928 (+)
G198784 NA other upstream 2687886 87493623 ~ 87496735 (+)
G198575 NA other upstream 3034131 87150202 ~ 87150490 (+)
G202039 NA other downstream 262282 90447118 ~ 90447573 (+)
G202185 NA other downstream 532106 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1052189 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1181501 91366282 ~ 91543765 (+)
G203414 NA other downstream 1437165 91622001 ~ 91624293 (+)

Expression


Co-expression Network