G201898


Basic Information

Item Value
gene id G201898
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90208261 ~ 90211007 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU228559
cgtgcagactggcactaagaacagagGGAAAGTTTCCCTAGTCAGCtccattattagtgcaatgccccttaaagtgttgcTCTGTCCTACCAGTGTGACAAAGTGGGggtccaccccctccctcctcttcccttccccaTGGGCTAGGTCCGTCTTCTGTGCACGGTTCAGCGGCCCATCCCGTGCCCCCTGCCCTCGTGCCTTGAACGCTTTCAGTGGATAaagctggagaactgcaaggcaatcccattgtgtgccactcaggagccatgAACAATATGACCAatgtatattgtcctgctaattacagggttaataatatataTGTGAGAATATCCAACAGGCTTTTATATCattctaaattaataataataataataataatataataacaataataaatcgCTTTGTTTTAGTTGTAAAATAACGTAAAATGAGCAAGAAAAAGTCCATTATTGAACATGGTGTGAcacattgttactaatttgtaaataaagctaATTTGTTtttttagaattatttatttctgtttttagagggagagaaacctcATGGGTCTTCCAGTCAAGGCCGGCACGGGTATTGGACCAGCATCTgtagcagtgtcttagaccgttgCACCACTCAGGCACTGTACAGCATGCCCTGTTGGGAGtggcctacagtactacagtaagaccaaaataaaatgattaaaaaccttagtgtaacaacagttttagtaagtaatattGAAGTCGTACACAATTATCattttctatttaggtttatgtcgcccattcattgtcagagaCACAGTTGGACCCAAAAGCGTAATCAGTGCTTTAACTgtccttgcgctggtctggagaaATTAAGTGGTGatgcagggtaccgtactaaacaaCAAATGACCTCTAAATCCTGCAGCATAATCGCAAAACTTTTAGTGGAGTAACCACTGTAGTAATGCTACTAgcagttgtcatgacgttggcctctttgggtttagcaaccccatccccctctccctgcctcccccttgcctccttcaactaggctgctgtggtcagaggtagtaaattcctgagaagacctccttgtggccacacagtatagagagagtagattttcatggagcacaaaggaatttcttccacctcacagaacttgaggtacgaaatcggtgaagaatccagctacgaactggtccgtttgtcacaacttgggaagctcatgggagacggtgtggccacattaccataacgctgtttatataatagcctcagatatgaggtttacatctaattgttgtataagatgaatgagtgaggatgatactgtttgtgtaattgtgtaatatgactttggactgtttaatgaagaaaaatacaattcccttttgatttgaactaaatcagaggatcgcccctgagcccagttagggtcagacatcctggaccgcccctgagcccagttagggtcagacatcctggaccgaccctgagcccagttagggccagacatcctggaccgcccctgagcccagttagggtcagacatcctgggacagccctcttcggcccttccgaataaaacccccactcgggttttcgatcagcagaccgagcttacctcaattacgagatggctaaaggttgcagaccatgtttttctccattaggaggacaaaggttgtagaccattgctgaatattttaaccataccacgtggttaaactcttagactatcgataccgacagaataagaataAGAACAAGAACAATTAaatactagtctgcagctaggaattcggtatcattgaacgggaagaacgacaaccgccgaaacatccattctataacgagtcactctgaacaatcccctctaaccactactgagagggagagagatggactattctacaaaataaattaacttttcaccagcgatcaagacgacacaccgagtgtaaatatatatattgattgcaattgttcccgaatgagtgagcgttcatgtgcaaaggattaacaTTTCATttgttataattattaactctgtagtgacttctcagctgacccccacttcccttttgtctaacaagccgccatgccggttcagcccactagggcacattctcttatcatttcttgtaaccatatttactgtttgtttatgcatttctgtgaattacttagttagtaataaataaatgatttaagacaactgatgtgaattacttagttagtaatacataaatgatttaagacaattgatgtatggactcatagtgaagactgggttcgtgcagataaccaacaatttacgacgtttggaatgagactaatgtgAGGTAATGTAAATAATTTATTAAtttgaagactaattgatcagataaaatatcaaaaaagttattttaggaaatgataactttgtaatctgaatatttttccttggtgccccgacttcgtagtaattacggttacatgattaatcagtctaatcgcgtaataactaattacagagaatctttgataaaaaactataagtcttcatttaatgatagtaaagacacgacagtgtTACGTATGTAGCTCCATTGTTGTGTCTTACTTTGGGGACGTGTGGGTTGAACTCCACAGCTCTGTGTATGGCTTCTACAGCATTCATCTCTGCTGTACTCAACCCTCGCCTTGACGCTGCCTCTGGAGAGAACCTGCATGGGGAACACGgg

Function

NR:

description
suppressor of tumorigenicity 7 protein homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU228559 True 2716 lncRNA 0.41 2 90208261 90211007

Neighbor

gene id symbol gene type direction distance location
wnt2 LOC106561551 coding upstream 11325 90183281 ~ 90196936 (+)
asz1 LOC106561550 coding upstream 38146 90130540 ~ 90170115 (+)
LOC110502295 LOC106561548 coding upstream 164437 89937146 ~ 90043824 (+)
LOC110499430 LOC106561547 coding upstream 278760 89924291 ~ 89929501 (+)
LOC110499418 LOC106561545 coding upstream 313842 89883357 ~ 89894419 (+)
cpa5 cbpa1 coding downstream 366913 90577920 ~ 90594338 (+)
LOC110499537 LOC106561558 coding downstream 383443 90594450 ~ 90599294 (+)
poc1b poc1b coding downstream 396083 90607090 ~ 90667412 (+)
dusp6 dus6 coding downstream 490406 90701413 ~ 90706025 (+)
si:dkey-106n21.1 LOC106561561 coding downstream 582241 90793248 ~ 90868325 (+)
G201886 NA non-coding upstream 1843 90202879 ~ 90206418 (+)
G201896 NA non-coding upstream 13503 90194510 ~ 90194758 (+)
G201895 NA non-coding upstream 14467 90193475 ~ 90193794 (+)
G201893 NA non-coding upstream 18792 90189082 ~ 90189469 (+)
G201892 NA non-coding upstream 19299 90188755 ~ 90188962 (+)
G201944 LOC100380720 non-coding downstream 89590 90300597 ~ 90321713 (+)
G201968 LOC106561553 non-coding downstream 127151 90338158 ~ 90340558 (+)
G202007 NA non-coding downstream 200578 90411585 ~ 90432515 (+)
G202035 NA non-coding downstream 230834 90441841 ~ 90442145 (+)
G202037 NA non-coding downstream 233187 90444194 ~ 90444483 (+)
LOC110499234 rbl2 other upstream 785823 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 2340294 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 2671333 87535936 ~ 87536928 (+)
G198784 NA other upstream 2711526 87493623 ~ 87496735 (+)
G198575 NA other upstream 3057771 87150202 ~ 87150490 (+)
G202039 NA other downstream 236111 90447118 ~ 90447573 (+)
G202185 NA other downstream 505935 90716942 ~ 90717421 (+)
LOC110499641 LOC106561583 other downstream 1026018 91235465 ~ 91239737 (+)
mgat4c LOC106561589 other downstream 1155330 91366282 ~ 91543765 (+)
G203414 NA other downstream 1410994 91622001 ~ 91624293 (+)

Expression


Co-expression Network