G202419 (cbpa1)


Basic Information

Item Value
gene id G202419
gene name cbpa1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90590350 ~ 90593116 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU229140
GCCAGGGTTGGGCTTCCTGGTCTTACGCCACATACGGTTACTATTGTGAGTGTAGTAGTAGCCATCGGGGTTAGTCACAATCTCCAGGAAGATGTCCATCTTGTCCAGGATGGCAGTGAGAGCGGCGTCACGTCCGTAGTCGGTCACAATCTTCTTGGCGAACCAGGTGCCGCTAGCTTGAGTGATCCATTCCCTGGAATGGATTCCTGTGTCAAGCCAGATACCAGGTCTGTTGGTTCCACCAGTACTGAACTTGAGCACATTCAGGGTGCGTCCCTGGTAACTCTGGCCAATCACGATCTTGCTGACCAGATTGGGGTTCTCAGCCACAAGCATGTCCTGGAAACTATAGATatcagcAATGTCGTGGTAGTTGGAGTAGTCGTAGTCATCGGTGGTTCTGGGGGCAGCGGCACGTGCACTCAGCATCTGGTCCTGCTCCTCGTCcaacataacCTGTAGGTCCTTGATCATGACGGAGTACGGGATGTCTTCAGTCTCCAGGAAGGCCTTGACGGTCTGCAGGCTGGTGAAGGGAACTCTGATGTCCATAGGAGTGGAGAGGTCAATGGGCTCCATCCACACATCCAgcttggagagaggagggaggagagagagcagggtaggagagagagcaggaaggaTGAGGACAGAAGACAAGTTGACATGTTAAGCCAACATAGCAAGCACTTTGAACAGCTATTGAAAAGGAAatgcatggtcaagttaatatttattgttatttttacttttttaaattttttatttttaacccaTCCGtagctttttttgtttttaaagctTTCTtgttacatatacacacacattatatatattacatttcaCATACTACATAAATGGTACTTTCATATACAGCATTCACCTGACAAagatatattttacatacatacatacagtgccttgcgaaagtattcggcccccttgaac
>TU229142
GAGGATGACAGTGGCTGTTGTGTTCAACTCCCTAGTCTGATATGTGCCCTTTGACCTTGTAAAATAATCACTGAAAAAAGAAGAGGTCAATTGAAATGGAGAGATGACATTGTAATCAACATTTGTGATCAACCTAGAAATGTAAGGGCATTTTCTATTGTGATGAGAGACTCACACTATTGTGAGTGTAGTAGTAGCCATCGGGGTTAGTCACAATCTCCAGGAAGATGTCCATCTTGTCCAGGATGGCAGTGAGAGCGGCGTCACGTCCGTAGTCGGTCACAATCTTCTTGGCGAACCAGGTGCCGCTAGCTTGAGTGATCCATTCCCTGGAATGGATTCCTGTGTCAAGCCAGATACCAGGTCTGTTGGTTCCACCAGTACTGAACTTGAGCACATTCAGGGTGCGTCCCTGGTAACTCTGGCCAATCACGATCTTGCTGACCAGATTGGGGTTCTCAGCCACAAGCATGTCCTGGAAACTATAGATatcagcAATGTCGTGGTAGTTGGAGTAGTCGTAGTCATCGGTGGTTCTGGGGGCAGCGGCACGTGCACTCAGCATCTGGTCCTGCTCCTCGTCcaacataacCTGTAGGTCCTTGATCATGACGGAGTACGGGATGTCTTCAGTCTCCAGGAAGGCCTTGACGGTCTGCAGGCTGGTGAAGGGAACTCTGATGTCCATAGGAGTGGAGAGGTCAATGGGCTCCATCCACACATCCAgcttggagagaggagggaggagagagagcagggtaggagagagagcaggaaggaTGAGGACAGAAGACAAGTTGACATGTTAAGCCAACATAGCAAGCACTTTGAACAGCTATTGAAAAGGAAatgcatggtcaagttaatatttattgttatttttacttttttaaattttttatttttaacccaTCCGtagctttttttgtttttaaagctTTCTtgttacatatacacacacattatatatattacatttcaCATACTACATAAATGGTACTTTCATATACAGCATTCACCTGACAAagatatattttacatacatacatacagtgccttgcgaaagtattcggcccccttgaac

Function

NR:

description
carboxypeptidase A1-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU229140 False 948 lncRNA 0.44 6 90590350 90593116
TU229142 True 1084 lncRNA 0.45 5 90590350 90592867

Neighbor

gene id symbol gene type direction distance location
tes LOC106561556 coding downstream 13877 90557570 ~ 90576473 (-)
cav2 LOC106561555 coding downstream 120161 90464686 ~ 90470189 (-)
cav1 LOC106561554 coding downstream 126822 90453696 ~ 90463528 (-)
met LOC106561553 coding downstream 163203 90338143 ~ 90427147 (-)
LOC110499482 LOC100380720 coding downstream 268571 90300546 ~ 90321779 (-)
cep41 cep41 coding upstream 6198 90599314 ~ 90606949 (-)
tmtc3 tmtc3 coding upstream 453615 91046731 ~ 91157443 (-)
c2h12orf29 cssa10h12orf29 coding upstream 621551 91214667 ~ 91219570 (-)
lyve1b LOC106561566 coding upstream 633982 91227098 ~ 91230204 (-)
eif4g2b LOC106561567 coding upstream 646628 91239744 ~ 91254841 (-)
G202388 NA non-coding downstream 61643 90528074 ~ 90528707 (-)
G202370 NA non-coding downstream 94565 90495577 ~ 90495785 (-)
G202358 NA non-coding downstream 107838 90482155 ~ 90482512 (-)
G202356 NA non-coding downstream 109301 90480838 ~ 90481049 (-)
G202353 NA non-coding downstream 112447 90477701 ~ 90477903 (-)
G202426 NA non-coding upstream 4106 90597222 ~ 90597427 (-)
G202427 NA non-coding upstream 4649 90597765 ~ 90597978 (-)
G202428 NA non-coding upstream 5063 90598179 ~ 90598453 (-)
G202485 NA non-coding upstream 106206 90699322 ~ 90699544 (-)
G202494 NA non-coding upstream 120659 90713775 ~ 90714018 (-)
G202279 NA other downstream 148925 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 980460 89606837 ~ 89609890 (-)
G198912 NA other downstream 3263881 87322139 ~ 87326469 (-)
G198342 LOC100194703 other downstream 3686394 86903036 ~ 86903956 (-)
G197554 NA other downstream 4626685 85959845 ~ 85963665 (-)
G203915 rassf9 other upstream 996096 91589212 ~ 91591049 (-)
G204024 NA other upstream 1194071 91787187 ~ 91788103 (-)
LOC110499897 LOC106573100 other upstream 1804944 92398054 ~ 92443838 (-)
G205192 NA other upstream 2368928 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 3719308 94312424 ~ 94312774 (-)

Expression


Co-expression Network