G202656 (yo84)



Basic Information


Item Value
gene id G202656
gene name yo84
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 90956410 ~ 91052753 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU229406
aaattgatcagaaatacagtgaagccattgttaatgttgtaaatgactattgtagcgtGAAACAGCAGATTATTTATGGAATAtcaacagaggcccattattagcaaccatcactcctgagttccaatggcacattgtgttagctaatccaagtttataattttaaaaggctaattgatcattagaaaaagctcttgcaattatgttagcacagctgaaaaatgtcGTTGTGACTaaggaagcaataaaactgggccttttttagactagttgagtgtctggaaCATGAGCATTTGTGGTTTTGAtttcaggctcaaaatgaccagaaacaaagtgctttcttctgaatctcgtcagtctattcttgttctgagaaatgaaggctattccaagcgagaaattgcaaagaaactgaagatctcgtacaacgctgtgtactactcccgtgacagaacagtgcaaactgtctctaaccagaataaaaagagtAGTGGGagtccccggtgcacaactgataAAGAGGACaattacattagagtgtctagtttgagaaacagtccTCAAGGCATCTGTTtcacaaactagacactctaatgtacttgtcctcttgctcagttgtgcaccggggcctcccactcctctttctattctggttagagccagttcgcgctgttctgtgaaggagtagtacacagcattgtacaagatcttcagtttcttggcaatttctcacatggaataaccttcatttctcagaacaagaatagactgacgagtttcagaagaaagttctttgtttctggccattttgagcctttaatcaaacccacaaatgttgatgttccagatactcaactagtctaaagaaggccatttgtattgcttttaatcaggacaacagttttcagctgtggtaacataattgcaaaaggcttttctaatgatcaatttgcctttgaaaatgataaacttggattagctaacacaaagtgccattggaacacaggagtgatggttgctgataatgggcctctgtacgtctacgtagatattccattaaaaatcatctgtttccagctacaatagtcatttacaacattaacaACTGTCtcttcgttgttggtaatcaagcctaccagaaaatataaaaaacgatcggcctatatcgaatctccatTGCTCTCTAaaatttttgaaaaagctgttgcgctgtaactcactgccttcctgaagacaaacaatgtatacgaaatgcttcagtctggttttagatcccatcatagcactgagactgcacttgtgaaggtagtaaattaccttttaaatgGTGTCAAAACCGAggttctgcatctgtcctcgtgctcctagaccttagtgctgcttttgataccatcgatcaccacattcttttggagagattggaaatccaaattggtctacacggacaagttctggcctggtttagatcttatctgtcggaaagatatcactttgtctctgtagatggtttgttctctgacaaatcaactgtaaatttcagtgttcctcaaggttccgttttaggaccactattgttttcacaatatattttacctattggggatgtcattcgaaaacaatgttaactttcactgatatgcagatgacacacagctgtacatttcaatgaaacatggtgaagccccaaaattgccctccctagaagcctgtgtttcagacataaggaagtggatggctgcaaacgttctacttttaaactcggacaacagagatgcttgttctaggtcccaagaaacaaagagatcttctgttgaatctgacaatcttGATGGtcgtacagtcatctcaaataaaactgaaggacctctgTGTTACTCTGAACCCTAATCTCTCTTTtcacgaacatatcaagactgtttcaaggacagctttttccatctacgtaacattgcaaaaatcagaaactttctgtccaaaaatgatgcagaaaaattaattcatgcttttgttacttctaggttagactattgcaatgctctactttccggctacccggataaagcactaaataaacttcagttagtgctaaatacagctgctagactcctgactagaaccaa

Function


NR:

description
ORF2 protein

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU229406 True 2120 lncRNA 0.39 2 90956410 91052753
Loading

Neighbor


gene id symbol gene type direction distance location
si:dkey-106n21.1 LOC106561561 coding upstream 88085 90793248 ~ 90868325 (+)
dusp6 dus6 coding upstream 250385 90701413 ~ 90706025 (+)
poc1b poc1b coding upstream 288998 90607090 ~ 90667412 (+)
LOC110499537 LOC106561558 coding upstream 357116 90594450 ~ 90599294 (+)
cpa5 cbpa1 coding upstream 362072 90577920 ~ 90594338 (+)
cep290 cep290 coding downstream 104708 91157461 ~ 91213269 (+)
LOC110499641 LOC106561583 coding downstream 182712 91235465 ~ 91239737 (+)
mgat4c LOC106561589 coding downstream 313529 91366282 ~ 91543765 (+)
rassf9 rassf9 coding downstream 529831 91582584 ~ 91591130 (+)
slc6a15 LOC106561596 coding downstream 702206 91754959 ~ 91779981 (+)
G202558 NA non-coding upstream 166743 90789452 ~ 90789667 (+)
G202555 NA non-coding upstream 169093 90787038 ~ 90787317 (+)
G202534 NA non-coding upstream 188347 90767860 ~ 90768063 (+)
G202514 NA non-coding upstream 220593 90735525 ~ 90735817 (+)
G202180 NA non-coding upstream 247579 90708576 ~ 90708831 (+)
G202844 NA non-coding downstream 199607 91252360 ~ 91254789 (+)
G203197 NA non-coding downstream 226998 91279751 ~ 91279959 (+)
G203251 NA non-coding downstream 315806 91368559 ~ 91369003 (+)
G203281 NA non-coding downstream 359260 91412013 ~ 91413548 (+)
G202185 NA other upstream 238989 90716942 ~ 90717421 (+)
G202039 NA other upstream 508837 90447118 ~ 90447573 (+)
LOC110499234 rbl2 other upstream 1533972 89395057 ~ 89422438 (+)
G199223 hipk3 other upstream 3088443 87866877 ~ 87867967 (+)
G198811 LOC106561481 other upstream 3419482 87535936 ~ 87536928 (+)
G203414 NA other downstream 569248 91622001 ~ 91624293 (+)
G203438 LOC106561592 other downstream 616083 91668836 ~ 91671899 (+)
G203551 NA other downstream 774096 91826849 ~ 91847400 (+)

Expression


G202656(yo84) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 4.
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G202656(yo84) Expression in each Bioproject

Bar chart with 20 bars.
G202656(yo84) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 150.
End of interactive chart.

Co-expression Network