G203438 (LOC106561592)


Basic Information

Item Value
gene id G203438
gene name LOC106561592
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91668836 ~ 91671899 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU230248
ACAAGACATGATATCAATAACAAGACAAcgagctgaaacgagccacctacgattccccacataGCAGCTtttttgtcattgttgctagctgtcTGACCATCCAGAATCATAACAACACGGCCTTCTACCTCTAAGATGTGTGTGCATCGTTTTAGTGACTGTAGGGCAATGGAATTATAAAGCACAGGGAATTACAATATTCACACTGTCCTCAACTTATAGGACATACTATAGTTGATCTTTAGATGGATTATTTCCTGGACATACAAAGCATgctttttatttatgtattttatttaacctttatttaactaggcaagtcagttaagaacaaatccttatttacaatgacggcctaccccgaccaaaccctaacccagacgacgctgggccaattgtgcgccgccctatgggactcccaatcacggccggttgtgatacagcctggaatcaaaccagggtctgtagtgacgcctctaatactgagatgcagtgccttagaccgctgcaccactcttaATGGAGTGCTCGAACCGGCTCAGAGTTTTCAAGTCACAGAGGGGTACATTTTCAGCAATGCATTGTTTAACATCGGGTGTTAACCTGAAAGTAAATTTCATCTGTGTGTTGTGAACTGAAATGCACTGCTCAACCTCGATGAGCAGACCTTTAAATCTTGAAGCAGTTCATCTCCTCTGACATTTGACTCTTTTGACCAACAGGTTCACAGTTTGTTGACTCCATGGAGAGGCTTCATGTCTCTACAGTCTCGGAGACAACCAGTCAGTTATCAGTATCTAGGCCTACATTATTTTGACTTCTGTATGTCCTCTTCAATCAATCAGTGTCACAGTCAGATTTCTGTCAGTCAACATTGGGGGTTATAAACGTGCGCAGTAGTAATGCTAAAGTTAGAGAGGCTGTGAGTCAGTCAGCTGGCTGGACATGCAGAAGAGACATTCACAATCACATGGCCCAGGATATGTTGGCCGCATGTTCCTTAGCCTTCATCCGCAGCACAGCAATGCTGGATGAGCGTCTCTCAAATTCAGGCTTGGTCTCGAATGGGTGTCCATTGGGCGAGGGCGTGAGGAGGGAGTCGGCCGTGAAGAAGTTGTTGAGGGAGACGTGTCCAAACTGGTTCTGCTGGTTGGGGAAGCCCACGTACCCGTGGTCGGCTGCGGAGCGGGGGGAGTGGGAATACGAGGTGACACATGGGGGAGATCCACGGGGGAGCATGCAGGAGGAGACCACAGAGCCACTGGGAGCAGGGCTGGGCCACAGGTTGTTGGAGATCTGTGGATAACTGTCTGTTCTTGGCAACACGGATATGTCGTATGTGGCTGCAAAGTGACTTTTTGCCTGTTGAATCTGTCCATAACGTTCTCTTTTTCTCCACTTGGCTCTTCTGTTTTGAAACCACA

Function

NR:

description
ALX homeobox protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230248 True 1424 TUCP 0.47 2 91668836 91671899

Neighbor

gene id symbol gene type direction distance location
rassf9 rassf9 coding upstream 77706 91582584 ~ 91591130 (+)
mgat4c LOC106561589 coding upstream 125071 91366282 ~ 91543765 (+)
LOC110499641 LOC106561583 coding upstream 429099 91235465 ~ 91239737 (+)
cep290 cep290 coding upstream 455567 91157461 ~ 91213269 (+)
kitlga LOC106561562 coding upstream 697518 90938346 ~ 90971318 (+)
slc6a15 LOC106561596 coding downstream 83060 91754959 ~ 91779981 (+)
LOC110499735 LOC106561597 coding downstream 164915 91836814 ~ 91852352 (+)
LOC110502363 LOC106561595 coding downstream 181953 91853852 ~ 91933354 (+)
LOC110502371 LOC106561599 coding downstream 265253 91937152 ~ 92008067 (+)
smc1b LOC106561601 coding downstream 356535 92028434 ~ 92049230 (+)
G203415 NA non-coding upstream 24814 91618362 ~ 91644022 (+)
G203281 NA non-coding upstream 255288 91412013 ~ 91413548 (+)
G203251 NA non-coding upstream 299833 91368559 ~ 91369003 (+)
G203197 NA non-coding upstream 388877 91279751 ~ 91279959 (+)
G202844 NA non-coding upstream 414047 91252360 ~ 91254789 (+)
G203503 NA non-coding downstream 96861 91768760 ~ 91769152 (+)
G203547 NA non-coding downstream 150420 91822319 ~ 91823796 (+)
G203559 NA non-coding downstream 181314 91853213 ~ 91853577 (+)
G203579 NA non-coding downstream 189494 91861393 ~ 91861963 (+)
G203561 NA non-coding downstream 246971 91918870 ~ 91919819 (+)
G203414 NA other upstream 44543 91622001 ~ 91624293 (+)
G202185 NA other upstream 951415 90716942 ~ 90717421 (+)
G202039 NA other upstream 1221263 90447118 ~ 90447573 (+)
G203551 NA other downstream 154950 91826849 ~ 91847400 (+)
G203646 cpa2 other downstream 349856 92021755 ~ 92024742 (+)
G204240 ckap5 other downstream 485376 92157275 ~ 92159903 (+)
G204593 NA other downstream 1009447 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 1165525 92837196 ~ 92839440 (+)

Expression


Co-expression Network