XLOC_021425 (smim29)


Basic Information

Item Value
gene id XLOC_021425
gene name smim29
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 3721041 ~ 3744838 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042596
CGTGCGAGTCTGGTTGGACTTCAGCTTGATCATCGCGCTCAACAGATGAAAGTCCTCAACTCCGGTCAAGTCTTCACCTCTCGCCGCACCTAGAAACCCTTCTACAGGCCCTCCGCTAGCATAAATAAACCCTCCGTCGCTTCATTTTGTGAGCTAGTGTCGCACAGACGCCATTACTCTAAGCGCTGCGCAAATTGCATAGCAGCGAGCGCGGTTCCTTTTTTGTGAATAGGACGTTACGTAGAAGAGAGGAGGAACTAAGCAAGTCACGTAACGTtatttgtcttctttttttattagttCATTGAAGTATTGGTTATTAAAGGCCCTAGACTTATGCATTGCATATAATGTATACCCTGACATCACCGAAATCTTCCATTATTGTAAAATCACTAAATCAAACTAATAAGGGGCGGGACCCGCTCTATTTTTAGCAAATCAGATTACGCAGGATTCCTGGCAATCACTTTACATGGACAGAAATTCAAGATAACAGATTGGCTGGCACTGGAAGGCGTGGTGGTTAATTATTTATCAGATATTTGTTATGAAAGGACTTTCTTTCCGTAAACACTGACAGCAGAGCTTTCATGTGAAGCGAACTCATGACTTGCGTTACAATAACTGGATTTGGAGTGGGCTTGTAGATCAGAGACTGAGCCTGAGTGAATCCGCTGCGTTTACTTCATCGCCTCGATGGTCAAGTTTGACTGGTCATCATGATGCTTTCACTCCTCGTTGGGCCAGAGGGAGC
>TCONS_00042597
GTGCGAGTCTGGTTGGACTTCAGCTTGATCATCGCGCTCAACAGATGAAAGTCCTCAACTCCGGTCAAGTCTTCACCTCTCGCCGCACCTAGAAACCCTTCTACAGGCCCTCCGCTAGCATAAATAAACCCTCCGTCGCTTCATTTTGTGAGCTAGTGTCGCACAGACGCCATTACTCTAAGCGCTGCGCAAATTGCATAGCAGCGAGCGCGGTTCCTTTTTTGTGAATAGGACGTTACGTAGAAGAGAGGAGGAACTAAGCAAGTCACGACTTTCTTTCCGTAAACACTGACAGCAGAGCTTTCATGTGAAGCGAACTCATGACTTGCGTTACAATAACTGGATTTGGAGTGGGCTTGTAGATCAGAGACTGAGCCTGAGTGAATCCGCTGCGTTTACTTCATCGCCTCGATGGTCAAGTTTGACTGGTCATCATGATGCTTTCACTCCTCGTTGGGCCAGAGGGAGCATGTGGGAGTCACATGAGTGCGGGAGATGAGCAGTAAACAGGCCGCCCTAGCATGAACAGCACCACTCAGCCTCCTCACTCCGTCAACGGAGACGCGGCCGTGGGCTACGTGCTCGTGCCCTTCTTCCTCATCACCGCCATCGGGATGGTGGCCGCAGCGGTGATGTACATAAGGAGGAAACGCAGgATCGACAGACTCCGGCATCAGCTTCTTCCAGTCTACACGTATGACCCGACAGAAGAGCTGAACGAGGCTGAGCAGGAGATCCTGTGGAAGGAGGAGGACACGAAG
>TCONS_00042598
TTTCTCTTTCATTGCAGGACTTTCTTTCCGTAAACACTGACAGCAGAGCTTTCATGTGAAGCGAACTCATGACTTGCGTTACAATAACTGGATTTGGAGTGGGCTTGTAGATCAGAGACTGAGCCTGAGTGAATCCGCTGCGTTTACTTCATCGCCTCGATGGTCAAGTTTGACTGGTCATCATGATGCTTTCACTCCTCGTTGGGCCAGAGGGAGCATGTGGGAGTCACATGAGTGCGGGAGATGAGCAGTAAACAGGCCGCCCTAGCATGAACAGCACCACTCAGCCTCCTCACTCCGTCAACGGAGACGCGGCCGTGGGCTACGTGCTCGTGCCCTTCTTCCTCATCACCGCCATCGGGATGGTGGCCGCAGCGGTGATGTACATAAGGAGGAAACGCAGgATCGACAGACTCCGGCATCAGCTTCTTCCAGTCTACACGTATGACCCGACAGAAGAGCTGAACGAGGCTGAGCAGGAGATCCTGTGGAAGGAGGAGGACACGAAGGTTGTCCAGGGTTGGATGAGGACCTACCAACAGCGTAGACCACTGCTGCCGAAGGATCCTGATGCATGAAAATGAAAAAGATTCACTGGATGGACGTTTCTGAGCAATAAACTACTGTGTTTGCCCAATGAAGATGGGTTGAGGAGAGCTTTAGTGATGTGGCAGATCTGGAACCTCAGGTCTCCTCTCGCTCAACATGAAGTGCAGCTGTGCTTTTCTGAATGGAGGAGGCTGATTCGCCGCTGTGGCGATTATATTTATTTGGGTTTTATGTATTCTGCTGATGTTCTGTGCTATTAAATCCTCATGAAA
>TCONS_00042599
GTTGACCCCTAGGGCCAAGGTTTGCATTCTCCTTAAGTGATTGTGAAGTAGTgcaacataaaacatttgttagAAGGAGTTTAATAAAGTGTATAGAGAGAAGAATGTTttgacaggtggtttgtcaagcccactgacCACCTAAGTGCCGAACCTTTGCCTAGTAAAAGCTCTATGGtgggaaaaaatattaataataataaaatacaactgtGTCTGAAAGATTGGACACAGAAGTGATTTCAGGTAGATTTCTGAGACCGCATATTGATTTAAtcatgtaaaacaaaataaagagagCTTTTAAAAAAGGAAATCTGTATCAAATCCACCAGTTTGCTAACAAAGCTAAGTTAACAaagcttaaatatttaatattaaataaagcttaaaaaagTTAACAGAGCACAAATAAGTGTGAAATAAAGTGATGATCGCTCCTCAGCTGCTTCCAGTGTCTTGATCTGTAAATAAATGTCTTGTGTTGTATTTGACAGTCCTCGTTGGGCCAGAGGGAGCATGTGGGAGTCACATGAGTGCGGGAGATGAGCAGTAAACAGGCCGCCCTAGCATGAACAGCACCACTCAGCCTCCTCACTCCGTCAACGGAGACGCGGCCGTGGGCTACGTGCTCGTGCCCTTCTTCCTCATCACCGCCATCGGGATGGTGGCCGCAGCGGTGATGTACATAAGGAGGAAACGCAGgATCGACAGACTCCGGCATCAGCTTCTTCCAGTCTACACGTATGACCCGACAGAAGAGCTGAACGAGGCTGAGCAGGAGATCCTGTGGAAGGAGGAGGACACGAAGGTTGTCCAGGGTTGGATGAGGACCTACCAACAGCGTAGACCACTGCTGCCGAAGGATCCTGATGCATGAAAATGAAAAAG

Function

symbol description
smim29 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM29 (small integral membrane protein 29).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-211 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human SMIM29 (small integral membrane protein 29).

Ensembl:

ensembl_id ENSDARG00000090634

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042596 False 757 processed_transcript 0.45 3 3721041 3735009
TCONS_00042597 False 761 mRNA 0.53 5 3721042 3740415
TCONS_00042598 False 821 mRNA 0.51 6 3731375 3744838
TCONS_00042599 True 891 mRNA 0.44 4 3734491 3744521

Neighbor

gene id symbol gene type direction distance location
XLOC_021424 si:dkey-9l20.3 coding upstream 79602 3538463 ~ 3641439 (+)
XLOC_021423 NA coding upstream 183298 3537283 ~ 3537743 (+)
XLOC_021422 spata2 coding upstream 199918 3513201 ~ 3521123 (+)
XLOC_021421 NA coding upstream 294681 3425601 ~ 3426360 (+)
XLOC_021420 NA coding upstream 394746 3317136 ~ 3326295 (+)
XLOC_021426 CU682640.1 coding downstream 168466 3913304 ~ 3915754 (+)
XLOC_021427 FP102158.1 coding downstream 195070 3939908 ~ 3944734 (+)
XLOC_021428 b4galt5 coding downstream 277782 4022620 ~ 4071748 (+)
XLOC_021429 zgc:113278 coding downstream 481503 4226341 ~ 4243553 (+)
XLOC_021430 arl6ip5b coding downstream 509119 4253957 ~ 4259712 (+)
XLOC_021410 NA non-coding upstream 1127429 2581048 ~ 2593612 (+)
XLOC_021408 NA non-coding upstream 1165536 2554298 ~ 2555505 (+)
XLOC_021432 NA non-coding downstream 529078 4273916 ~ 4281107 (+)
XLOC_021441 LO017700.2 non-coding downstream 814726 4559564 ~ 4677500 (+)
XLOC_021448 NA non-coding downstream 1385144 5129982 ~ 5141915 (+)

Expression


Co-expression Network