G204088


Basic Information

Item Value
gene id G204088
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 91933145 ~ 91935174 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU230967
TGGTTTTTGAAGGATGACATTTATTTCACCAGGCATCTGACATCAGAACTGCTACAGTACAGAGTCAGACATTTTGGGGAGGGCCATCTACAGTTAAACCCCAGAGGGGAACCCAGGATTGGTTTTAATACATACAGTTTAACAGAACAAGAGAATCAGGGCTGCATctgaaattgcaccctattccctatataatgcactagcttttgaccagggtccatagtgctatgtacaaaagtagtgcactatataggcaatagggtgcaatTTCAGACTCAGACCAGGAAACATAACAGGCTGACacagggtcagggagagaggCTCTGTTCAAAAGCATTAAGAGTGCTGTTAGAACACCGTCTCCGAACTATGGTCCTCAGTTTCCCTTGTGGAGCGAGTTTTGGTGATCAACAATGCTAACCTTCAGTTGATTTCATCATACAATACTGTTAACATATAGATCATGTGTTGCTGGCTGCTGCTACTTGTCCTTTAACATTCAATAGTCCCAGCAGACAGCAGATACAATTAATTATTTGACAGTTAGTTCAGCTTACACCatagttggggtcaattccatttcaaatcTAGTAAATTTAGGAAGTACACAAAAATTCCATCTCTAATTTGtgttactttctgaattgactggaattgaaatggtattgaccccagccctggctCACAGCAATCACAGATATGGCTGTTGTAATGTGCAGTAAAACTGGCACACAGGATACAACCACCACACACGGGGGACTTCCAGGACCAGGATAGGAGGCTTACAGTACAGGCACAGGTAAacggctcctctcctcctcacactttacattattatatacagtacgTAACTATGGTTACCATATGGACCTCACCTGAGGTCCAGAACAGAAGACCTCTATGGGTCAAAGGTGAGCAAACAACTTAGCAGCACAGGCGTTAGGTTAGTTCACAACTTTTAGAGGGAGGGTGTGGCAACAGCATTAAGAGGAGAATCGTACATTACTACATAGATATAAATTATGAGCAGTGGACGAGTGAGTGAAGACAGTCGGTGTATCCTCAAAGAGACATTGTATTTGCACATAGAGTCAGTAAGGATTACGTGTAAAGACGAAGATAGCAGACAGaaggtgactgactgactgaaggccTTTTCCAAGTGGTTACAAGACTATTGTTAGTTAGTGTATCCAGTTGACAGGTTGACAAGTGCAAGACAAGTTTCACAATTTGGTCAGCTACAATAAGTGGGAGCTGAATTCGAAGCAAAATAACATTTAAACCAAGCTGTGATTTAAGGGGTGCGGTGATTTGTCAGTTGACATAAAGCCACATTGATATCAGATAAGGAGGGACAGTGGTTCTGCTTACAGTGCTTCTGTTCCTTTGCTGTGCAACTGGAGAACCTGGTCCAGGTCTTGTAGGCCAGCTACAGAGCCCAGTGGCCAGCTACAGAGCCCAGTGGCCCACCcatcctcttttcctcctctccgcACCACGCATTAACTCCCCCAGCCCAGAAAGACCCTAAAAATCTGCctctatatgtatgtatgtgtgtatgtgtgtgtgtctaaatatGACCCTTGTGGGCTTACTATATACTTAATATGAGCTGAGAGGGAAAGATGTCTACCAAGCTAACAGAGAATTTATTCTGCACAAGTCAGTGCAACTGCCAGGCAGGTTAGACTAGATAAATTTCCCTAAGGATACATCTATCTCACTCTGGAGAAAGACTACAGCTAATTATGCTGAGATAAGATTCCATTCCTGCGAGCTTGCACAGTTTTCATGGTTACAATATGtaggggctgggggttccatggTTTCCAAGGTGAAAGCTCAGAGGTAAAAGTGCTAGTCAGCAGCGTCCAAGGTTAAGGGTCACGACGGGAGGTCACAGCCATGTTCAGTTATTGGCCACCTCGTCAGTGGTGTCCGCCGTTGTCTCTAAGGTGCTGTCGAGTCCGCCCCGGGCACGCCAGATCTTCACTGTTCGATC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU230967 True 2008 lncRNA 0.52 2 91933145 91935174

Neighbor

gene id symbol gene type direction distance location
lrrk2 lrrk2 coding downstream 95965 91780201 ~ 91837180 (-)
lrriq1 lrriq1 coding downstream 192316 91691853 ~ 91740829 (-)
alx1 LOC106561592 coding downstream 259415 91668397 ~ 91673730 (-)
LOC110499699 NA coding downstream 308941 91606745 ~ 91624204 (-)
nts LOC106561634 coding downstream 351839 91560700 ~ 91581306 (-)
LOC110499762 cbpa2 coding upstream 86581 92021755 ~ 92027773 (-)
LOC110499841 LOC106561606 coding upstream 218210 92153384 ~ 92190372 (-)
LOC110533906 NA coding upstream 262162 92197336 ~ 92202031 (-)
LOC110502383 LOC106561607 coding upstream 275156 92210330 ~ 92228748 (-)
cry2 LOC106561609 coding upstream 298257 92233431 ~ 92265019 (-)
G204096 NA non-coding downstream 27976 91901957 ~ 91905169 (-)
G204052 NA non-coding downstream 79548 91853295 ~ 91853597 (-)
G204050 NA non-coding downstream 81127 91851317 ~ 91852018 (-)
G204018 NA non-coding downstream 131905 91759738 ~ 91801240 (-)
G203975 LOC106561596 non-coding downstream 160017 91771302 ~ 91773128 (-)
G204165 NA non-coding upstream 116719 92051893 ~ 92052201 (-)
G204166 NA non-coding upstream 118105 92053279 ~ 92053486 (-)
G204171 NA non-coding upstream 124442 92059616 ~ 92059971 (-)
G204187 NA non-coding upstream 151141 92086315 ~ 92086523 (-)
G204196 NA non-coding upstream 164216 92099390 ~ 92099781 (-)
G204024 NA other downstream 145042 91787187 ~ 91788103 (-)
G203915 rassf9 other downstream 342096 91589212 ~ 91591049 (-)
G202279 NA other downstream 1491720 90377557 ~ 90441425 (-)
LOC110499346 vps4a other downstream 2323255 89606837 ~ 89609890 (-)
G198912 NA other downstream 4606676 87322139 ~ 87326469 (-)
LOC110499897 LOC106573100 other upstream 462886 92398054 ~ 92443838 (-)
G205192 NA other upstream 1026870 92962044 ~ 92962934 (-)
G206742 LOC106561643 other upstream 2377250 94312424 ~ 94312774 (-)
G206744 LOC106561643 other upstream 2378216 94313390 ~ 94313918 (-)
G206750 NA other upstream 2392736 94327910 ~ 94328183 (-)

Expression


Co-expression Network