G204313


Basic Information

Item Value
gene id G204313
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92233292 ~ 92300447 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU231220
GCTCAGTCCTAGACCTTAGATTCTATACGATCTTGTCTACCAGATGCCTAACTTCCAGTATATTCCTGTGTCAACCTACTGCATGTGGCCCTCCAGTGACTAAATGACATAACCTCAAGAAAAAGAGCTGTAGCCATCCATCAGTAAATATACAACGCACTGACATTTATTACAAACTATATCTTCTACAGTTATTGTCATCATTACAACAGTGAATTCCAGAACGTGATAGTAAGGTCCATAAAACAATTACAACCAAGAATAGTGAAATGGGTCACAATTCTATCAGGGCTTTAATGAAAATAAACTCCTTTGTACAATtcaaaacaaataaatacaacTATTCAACAAAACCTCATCATGGCAACTTAAATTATAGTGAACGTACACTTTTGCGTGGGATGTACAATAGTTGGTGACTGACAAAACGATTAGAAGGTGACTGTGTtaatggaaaatataaatggagtTCGTCTCGGTTAGTATTTCCTACTCAACTTGTTCCCCAACACTGGGGGGGGGTTTCCCAAAATGTGTGTGGCACCAAGATCATTGTTCCTCAAATTGCCTACCAATGGACTTAAAATGATCTTAACGCTACCAAGGTTTTAGGGAAAGTAATGTTTGTTTTGACAAAGATATATttaacaataatatatatataaaaaagaaagagagacaaggcTGATTTACACAGAATATAGCAGGAACTAATATACATCCTTTACACATATGGTATTTAATTGAAACAAGTCATTATTGTATTAGTAGACAGCTTTATCATTAACTGTAGTGTTGTAGCCTGATCGATGGATTCACAAAATCTAAAACATATTGAGCCAAAAGGATTTGTTGTAGGTTGATGTGCTACAGAAATGAGAAATGTCTATCAGCAGTTTTGTCCGTACATTGTTTTTTTACATAAGCAACTTATATGTGAGAAGTTTAAATGAGGTGAAGGGACAGTGACGGGTGCCTATGCATTTTTCATCCGTGTGTGACCGCCGCCTCACTACCCATGATGGGGAGAAACAGGTGGGTGCCGTTCTTTTTCCAGTAAGGTTTGATAGAATATGATTCTCTATAGCTTTAATGAAGGGCACCAACAATTGTTGGTTATTTCACTGATTGATAATATATATTCTCTGCCACAGGCAAAATATTAGTTTACAAACCAATCACGTCATTGTGATAGAAGTCAAAATAACATACAGCAAAATAGCAAACAGATATATGGACAGTGGAATCAGAGACACGAACATGTTGAGAATGGAGGTTGTTCGCAACACATATCCACATCTTTGAAATGCACATAAAAATCGTATCAAATCTTTATAGACCATATGTTATTATGTGTTCAGTTTTTGGGGGATTTAAAACATTTCCCCCAGTTTGAGATTGCCCGGTGAGTTCTTAACGCTAAGGTTAATATCTTTGAGGGTCTATTGCAGTCTTAAAGAGGTTATTCACACACTAATAAAATGTTGTGGTAAATttttagatttttaaaaaaatgctATATTAGGAAAGCTGAAAGGTGTAAGAACTAACCTTCTTATAACAAACTTCATTGTAACCATGCTGTATACACATACATTATTAGCCAGTATGGTACTGTTTTTAACACTGATCTGGAGTTGCTGTTATTCTTAGATTTTAGAAAGTGGTTATGGTTTGTAaaacgctctgtgtgtgtgtgtgtgtaagtGACTCGTCTTGCCACAAGGATAGGGGGTGAGCGCAGGACATCAGAGGTCTTCTGCCATGTACTTCTGTTATACACCATCCCACATGGCA
>TU231221
GCTCAGTCCTAGACCTTAGATTCTATACGATCTTGTCTACCAGATGCCTAACTTCCAGTATATTCCTGTGTCAACCTACTGCATGTGGCCCTCCAGTGACTAAATGACATAACCTCAAGAAAAAGAGCTGTAGCCATCCATCAGTAAATATACAACGCACTGACATTTATTACAAACTATATCTTCTACAGTTATTGTCATCATTACAACAGTGAATTCCAGAACGTGATAGTAAGGTCCATAAAACAATTACAACCAAGAATAGTGAAATGGGTCACAATTCTATCAGGGCTTTAATGAAAATAAACTCCTTTGTACAATtcaaaacaaataaatacaacTATTCAACAAAACCTCATCATGGCAACTTAAATTATAGTGAACGTACACTTTTGCGTGGGATGTACAATAGTTGGTGACTGACAAAACGATTAGAAGGTGACTGTGTtaatggaaaatataaatggagtTCGTCTCGGTTAGTATTTCCTACTCAACTTGTTCCCCAACACTGGGGGGGGGTTTCCCAAAATGTGTGTGGCACCAAGATCATTGTTCCTCAAATTGCCTACCAATGGACTTAAAATGATCTTAACGCTACCAAGGTTTTAGGGAAAGTAATGTTTGTTTTGACAAAGATATATttaacaataatatatatataaaaaagaaagagagacaaggcTGATTTACACAGAATATAGCAGGAACTAATATACATCCTTTACACATATGGTATTTAATTGAAACAAGTCATTATTGTATTAGTAGACAGCTTTATCATTAACTGTAGTGTTGTAGCCTGATCGATGGATTCACAAAATCTAAAACATATTGAGCCAAAAGGATTTGTTGTAGGTTGATGTGCTACAGAAATGAGAAATGTCTATCAGCAGTTTTGTCCGTACATTGTTTTTTTACATAAGCAACTTATATGTGAGAAGTTTAAATGAGGTGAAGGGACAGTGACGGGTGCCTATGCATTTTTCATCCGTGTGTGACCGCCGCCTCACTACCCATGATGGGGAGAAACAGGTGGGTGCCGTTCTTTTTCCAGTAAGGTTTGATAGAATATGATTCTCTATAGCTTTAATGAAGGGCACCAACAATTGTTGGTTATTTCACTGATTGATAATATATATTCTCTGCCACAGGCAAAATATTAGTTTACAAACCAATCACGTCATTGTGATAGAAGTCAAAATAACATACAGCAAAATAGCAAACAGATATATGGACAGTGGAATCAGAGACACGAACATGTTGAGAATGGAGGTTGTTCGCAACACATATCCACATCTTTGAAATGCACATAAAAATCGTATCAAATCTTTATAGACCATATGTTATTATGTGTTCAGTTTTTGGGGGATTTAAAACATTTCCCCCAGTTTGAGATTGCCCGGTGAGTTCTTAACGCTAAGGTTAATATCTTTGAGGGTCTATTGCAGTCTTAAAGAGGTTATTCACACACTAATAAAATGTTGTGGTAAATttttagatttttaaaaaaatgctATATTAGGAAAGCTGAAAGGTGTAAGAACTAACCTTCTTATAACAAACTTCATTGTAACCATGCTGTATACACATACATTATTAGCCAGTATGGTACTGTTTTTAACACTGATCTGGAGTTGCTGTTATTCTTAGATTTTAGAAAGTGGTTATGGTTTGTAaaacgctctgtgtgtgtgtgtgtgagggtgtgtgggtgc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231220 False 1797 lncRNA 0.36 3 92233292 92235146
TU231221 True 1718 lncRNA 0.36 3 92233292 92300447

Neighbor

gene id symbol gene type direction distance location
LOC110499833 LOC106561605 coding upstream 81469 92139080 ~ 92151823 (+)
LOC110499816 LOC106561604 coding upstream 103544 92123060 ~ 92129748 (+)
LOC110499798 LOC106561603 coding upstream 116881 92086314 ~ 92116411 (+)
borcs5 LOC106561602 coding upstream 160975 92065598 ~ 92072317 (+)
LOC110502379 NA coding upstream 169584 92057562 ~ 92063708 (+)
LOC110499877 LOC106561610 coding downstream 87662 92388109 ~ 92392385 (+)
LOC110499906 LOC106561611 coding downstream 153878 92454325 ~ 92460616 (+)
LOC110502389 LOC106561615 coding downstream 215377 92515824 ~ 92680198 (+)
LOC118943603 NA coding downstream 341583 92642030 ~ 92643329 (+)
LOC118943605 NA coding downstream 364378 92664825 ~ 92669744 (+)
G204312 NA non-coding upstream 1383 92231710 ~ 92231909 (+)
G204309 NA non-coding upstream 4951 92228077 ~ 92228341 (+)
G204287 NA non-coding upstream 23739 92209299 ~ 92209553 (+)
G204277 NA non-coding upstream 30897 92201424 ~ 92202395 (+)
G204239 ckap5 non-coding upstream 78754 92153400 ~ 92154538 (+)
G204427 NA non-coding downstream 29694 92330141 ~ 92443833 (+)
G204578 NA non-coding downstream 143710 92444157 ~ 92444434 (+)
G204598 NA non-coding downstream 170859 92471306 ~ 92471516 (+)
G204601 NA non-coding downstream 176555 92477002 ~ 92495492 (+)
G204674 NA non-coding downstream 313652 92614099 ~ 92614399 (+)
G204240 ckap5 other upstream 73389 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 208550 92021755 ~ 92024742 (+)
G203551 NA other upstream 385892 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 561393 91668836 ~ 91671899 (+)
G203414 NA other upstream 608999 91622001 ~ 91624293 (+)
G204593 NA other downstream 380899 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 536977 92837196 ~ 92839440 (+)
G205404 NA other downstream 1070946 93371393 ~ 93388550 (+)
G205482 NA other downstream 1101170 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 1495635 93796082 ~ 93798936 (+)

Expression


Co-expression Network