G204427


Basic Information

Item Value
gene id G204427
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 92330141 ~ 92443833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU231342
ATGAAAAtatttACTGCAAGGTTCCTCTAACCTTCTTTGTCTGCATCGATAGGAATCATATGCCTATTTTTCacatatatattttataacatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttttgtccattaaaataacatcaaattgatcagaaatacagtgtagacatggttaatgctGTAGCAtattcacatacacacattgtTTGGTGTGTATTCCCCAATCACTGATGTCAAACTGATTAAATTAAGTTGTGTGAAGTACCTTTCACTTTGTTTTAATACTTGTCAATGTAAAGATACCTTTTCATAGTAAAACTGGAAGAATTTAAATAACCTCAAGCTTTTGAgaaatgagtagatgtgtccttGCTGAATCGCTACCAAATTGTTGTTTATTGTGGATTGTCTTCATATTATCATGACCTTCCCCACCCAGACCATGATTAACCAAAAAGACATGAGATCCCTCTCAAGAGTACCTTGGCAGTAAGTTCAACATTCTGGTCAATTCCTATATCCTAACAAATGAACATTCCCATAATCCCCCTCTGTAATGCTTCCTTAGGGCAGTATTCTGACTTGAGATCCGCAACCTTAACTCAGATTTCAGTGCAAATCGCCCATTGACGTCAACAAATGATTTACACGGAAATCTGAGTTACTTGTGCCTTTTTCAACTCTGAATGGTTCCCCATAGTAACCAGATGGAACCTaaacacagcagagagacagggagacatttATAAACTATACTGTAGCAATGGGGTGGTAGTTGGGTCTAGGTCTAATCAGACTTGTCCTTTTTCTTTGGTGTAACTTTACTGGCTACAGCAGACCCTACCGCCCCCACTCCCCCCGTCACCATGGAAACGCTGCCCTTGACCAATCCCACGCCGGCGGCCGGCACGCTGGTCACCACCGTCTTGGTGATGTCATAGCTCTTACAGCCCACCCAGGCCACGCCTCCCCATGTCGCTCCGACCGCCCCTTTGGTCATGTTGAAGAGACCGCCGGTCACCCTCCAGATGACCCCCGCCTCGGTCTTA
>TU231344
gtatcacaaccggccgtgattgggagtcccatagggcggcgcacaattggcccagcgtcgtccgggtttggctggggtaggctgtcattgtaaatgagaatttgttcttaactgaattgccaggttaaatatatatatttttaaatgtgcgTGTTTCTTTGTTGGTGAAATGGtgctttatttatttaaacaGCTCAGGACATCTGCTGGTATATGTATCATGTACGTAAAAATGTCATTTCCATGACTTCTTCTGTCCGTTTCTATGCAATAATTGACCACATCTCCAACTCATCAAGCATTAATCTAAAAACACCTGCATTACAATGAAAATATTTACTGCAAGACTGCAAGGTTCCTCTAACCTTCTTTGTCTGCATCGATAGGAATCATATGCCTATTTTTCacatatatattttataacatatacactaccgttcaaaagtttggggtcacttagaaatgtccttgtttttgaaagaaaagcacattttttgtccattaaaataacatcaaattgatcagaaatacagtgtagacatggttaatgctGTAGCAtattcacatacacacattgtTTGGTGTGTATTCCCCAATCACTGATGTCAAACTGATTAAATTAAGTTGTGTGAAGTACCTTTCACTTTGTTTTAATACTTGTCAATGTAAAGATACCTTTTCATAGTAAAACTGGAAGAATTTAAATAACCTCAAGCTTTTGAgaaatgagtagatgtgtccttGCTGAATCGCTACCAAATTGTTGTTTATTGTGGATTGTCTTCATATTATCATGACCTTCCCCACCCAGACCATGATTAACCAAAAAGACATGAGATCCCTCTCAAGAGTACCTTGGCAGTAAGTTCAACATTCTGGTCAATTCCTATATCCTAACAAATGAACATTCCCATAATCCCCCTCTGTAATGCTTCCTTAGGGCAGTATTCTGACTTGAGATCCGCAACCTTAACTCAGATTTCAGTGCAAATCGCCCATTGACGTCAACAAATGATTTACACGGAAATCTGAGTTACTTGTGCCTTTTTCAACTCTGAATGGTTCCCCATAGTAACCAGATGGAACCTaaacacagcagagagacagggagacatttATAAACTATACTGTAGCAATGGGGTGGTAGTTGGGTCTAGGTCTAATCAGACTTGTCCTTTTTCTTTGGTGTAACTTTACTGGCTACAGCAGACCCTACCGCCCCCACTCCCCCCGTCACCATGGAAACGCTGCCCTTGACCAATCCCACGCCGGCGGCCGGCACGCTGGTCACCACCGTCTTGGTGATGTCATAGCTCTTACAGCCCACCCAGGCCACGCCTCCCCATGTCGCTCCGACCGCCCCTTTGGTCATGTTGAAGAGACCGCCGGTCACCCTCCAGATGACCCCCGCCTCGGTCTTA
>TU231341
AGTAGCTTTATTTATAGAATACAGCATCAGTTTTTGCAAAAATAGTTCTATCATAGACAAACAAACTGCGACCCCAATGACACACTATTCAATATACAccgagtggacaaaacattaggaacaccagctctttccatgacacagactgaccaggtgaaaccaggtgaaagctatgatcccttattgatgtcacctgttaaatcaacttcaatcagtgtagatgaagaggaggagacagattaaagaaggagttttaagccttgagacaactgagacatggattgtttatctgtgccattcagagggtgacaaAAGATTCAAGTGCGGTATGGGTGTAGGTGCCAGTCACACCGGTTTGAGAGGATTACATactgtgggaagaattggagtcaacacgggccagcatccctgtggaacgcttttgataCCTTGGAgtgtccatgccccgacgaattgaggctgttctgagggctaaAGGGGGCGCAACTCAAAATTaggcaggtgttcttaatgttttgtacacttggtgtatagtgcactatatttgaccagggccccatccCAGTTTATAGTAACAGAGTCTCCAAGACATATATTAACTAGCAGAAGTGTCCCGATGAAAACAGTAAAGACAGGACAAGATGAAACAGCATTAAAATAAAATAGGTGAGACTTGTCATAATAATAAACAGCATATTGTGTTCAGGAAGAAGGAAAAACGACCTCTTGAAACATGCGATGCATAATGTGAGGGTGTGGAAATACCATGCCAAgttgttttctctttatttattttcaaataaaaaTGTCCTCACAGTGACTGTTCAAATAGAAACGTAAGAAACCAAACCCGAAAAGGAGAACAAACAGCACACTGGGAACAGACGTCTAGTTTCGATTTACATGTGGTCAAGTTGTCAAAtaatgtgaattcaacgtgaaatgaACAAAACATTTCACGATGTCAtttgatttaggttaaaagtcgtgtggggaaaaaaaaaaatacgAAATGACCTTACGCTGATGACtattttcaaatccaatcagttttctgTGTTGATAACGTCATCACATTGAGTTATTTGGTTgaaatgtggaaacaacgttgattcaaccagtattTGTCCAGTGGGAAGAAATTGGCCATCTACTTTTATTCTCTGATCAGAATGGACAGTAATTCAGGATTACACGTAACAATGTGGAAGTGAATTAGCTAGTCCCAGATCCGTTTATATCATCTTGTGAACTCAAACAGACTGGGACCAAGGCTAGACGTGATTGGAAAGCATAGAAAGAAAAGGCATGTGTGTTTTCAACTGTCCCTCCTACTCTGGGAATGTCAGTGTCAACTATCTATCAGTATTTATAAATGTAATGGAGGGAAGGGCacctttgatgggggtgggggccacaacaaATCTGAAAGCTGCAGTGGCTAgcgggtctgcgtacccacacaTGTAGTCAGAGCTACATTTTGTTGTTAGTGGCCCCCCTCTTGACAGTGGAGATAAtctatatagatattttttattgttcatttcctgcaattagACAATACAATATATAGAGAAAATGTTGTACTTTTAAAATAAGTTTGATGCAATTCTACTTCTCTCCATGTGGAGTAGAGAACATTTTGCAATTTTATAACTAATtccatgcaattctactcattttgctgTGGGGCGGAGAGAAAGATTTGCAGTttttaagctaatttcctgcaattctaaacaTTTGGTTAATATCCATGGGCACCCTCAGTCtgtaatttgaccatgattactacagGTTTAGATAGCTGGGATAGACTAATTTACAAATCGAAAAAATTTAAATTGACACGGGCTAATtcagtgactgtcagtgactgtcagtgacaaaaactgctgatgcacaaccaccaTGTAAAAAATGCAccatgtgtattctactattcttactctcAACAGTCAGTTGAGACCCCAACTGagttcacattttttaaatgtgttgttatttattcatttttcCGTTTTTGGGCCGCGGTACCTGATCTAATGCAAATGAAGGAACATAAACATACACTTGAGTAAAGTACATATAAGTGAATGAAATGGGTTATGTCCCAAATAGCACATTACTCCCTTTactgtacagtgcactactttggattaCAGCCTTATGggtgctggtcaaaagtagtgcactataaagggaatagggtgccatttgtgacgtaCGCATGAACTATGATGCTTGAAACTTAACGAGGTTCATCATGGTCATGTCTTTGATAGGCCATTGTGGAGTGGATTTACAAAATATTTAAATGGACATGGATTTCCTGTTTTATCAATAACTCAGCCATTTCTTAACTttaaggcctc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU231342 False 1087 lncRNA 0.46 2 92330141 92401931
TU231344 False 1421 lncRNA 0.42 2 92356712 92401931
TU231341 True 2378 lncRNA 0.39 2 92398071 92443833

Neighbor

gene id symbol gene type direction distance location
LOC110499833 LOC106561605 coding upstream 178318 92139080 ~ 92151823 (+)
LOC110499816 LOC106561604 coding upstream 200393 92123060 ~ 92129748 (+)
LOC110499798 LOC106561603 coding upstream 213730 92086314 ~ 92116411 (+)
borcs5 LOC106561602 coding upstream 257824 92065598 ~ 92072317 (+)
LOC110502379 NA coding upstream 266433 92057562 ~ 92063708 (+)
LOC110499906 LOC106561611 coding downstream 10492 92454325 ~ 92460616 (+)
LOC110502389 LOC106561615 coding downstream 71991 92515824 ~ 92680198 (+)
LOC118943603 NA coding downstream 198197 92642030 ~ 92643329 (+)
LOC118943605 NA coding downstream 220992 92664825 ~ 92669744 (+)
LOC110499936 LOC106561616 coding downstream 252349 92696182 ~ 92799984 (+)
G204313 NA non-coding upstream 29694 92233292 ~ 92300447 (+)
G204312 NA non-coding upstream 98232 92231710 ~ 92231909 (+)
G204309 NA non-coding upstream 101800 92228077 ~ 92228341 (+)
G204287 NA non-coding upstream 120588 92209299 ~ 92209553 (+)
G204277 NA non-coding upstream 127746 92201424 ~ 92202395 (+)
G204578 NA non-coding downstream 324 92444157 ~ 92444434 (+)
G204598 NA non-coding downstream 27473 92471306 ~ 92471516 (+)
G204601 NA non-coding downstream 33169 92477002 ~ 92495492 (+)
G204674 NA non-coding downstream 170266 92614099 ~ 92614399 (+)
G204675 NA non-coding downstream 171520 92615353 ~ 92615552 (+)
G204240 ckap5 other upstream 170238 92157275 ~ 92159903 (+)
G203646 cpa2 other upstream 305399 92021755 ~ 92024742 (+)
G203551 NA other upstream 482741 91826849 ~ 91847400 (+)
G203438 LOC106561592 other upstream 658242 91668836 ~ 91671899 (+)
G203414 NA other upstream 705848 91622001 ~ 91624293 (+)
G204593 NA other downstream 237513 92681346 ~ 92682355 (+)
LOC110499942 LOC106561637 other downstream 393591 92837196 ~ 92839440 (+)
G205404 NA other downstream 927560 93371393 ~ 93388550 (+)
G205482 NA other downstream 957784 93401617 ~ 93402234 (+)
G205683 LOC106573085 other downstream 1352249 93796082 ~ 93798936 (+)

Expression


Co-expression Network