G205683 (LOC106573085)


Basic Information

Item Value
gene id G205683
gene name LOC106573085
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93796082 ~ 93798936 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU232785
GTCCAAGTGATGGTCAGCTCCTTGCTGGTCCCGCCACCACCGCCAATGTCTGAGGGCGCCACCACGGGAACTACAGCCTCCAACGTGGTGACTTTGGGAGAGGGGCTGCTGGGGTCTCCTGTCCCCAGGGTGTTGGTGGCTATCACCCTAAACTCATACTCTGTCCAGGGAAACAGGTCCACCACCGTGGCTGTCTCTGCATTGCCTTCCACATCCGGAGGGGCTACAAAGAcagagatacagtgcattcagagctcttgcctttttccacattttgttaagttacagccttattctgatttttttttaaaaataatgtatcctcatcaatctacatataatactataatactacatCAA

Function

NR:

description
contactin-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232785 True 360 TUCP 0.50 2 93796082 93798936

Neighbor

gene id symbol gene type direction distance location
LOC118936881 NA coding upstream 74320 93716089 ~ 93721762 (+)
LOC118936880 NA coding upstream 171997 93623033 ~ 93624085 (+)
LOC110502396 LOC105018284 coding upstream 419177 93373307 ~ 93376905 (+)
LOC110499974 LOC106561627 coding upstream 460564 93270955 ~ 93335518 (+)
ric8a ric8a coding upstream 711197 93068836 ~ 93084885 (+)
LOC110500011 LOC106561648 coding downstream 346727 94145663 ~ 94149467 (+)
dnm1l LOC106561645 coding downstream 351495 94150431 ~ 94172796 (+)
LOC110500081 NA coding downstream 465073 94264009 ~ 94268751 (+)
zgc:136858 LOC106561644 coding downstream 471624 94270560 ~ 94300044 (+)
LOC110500101 LOC106561643 coding downstream 501233 94300169 ~ 94317655 (+)
G205665 NA non-coding upstream 38553 93757319 ~ 93757529 (+)
G205650 NA non-coding upstream 70079 93725559 ~ 93726003 (+)
G205599 NA non-coding upstream 181343 93614493 ~ 93614739 (+)
G205594 NA non-coding upstream 192567 93603240 ~ 93603515 (+)
G205586 NA non-coding upstream 202330 93593474 ~ 93593752 (+)
G205706 LOC106561641 non-coding downstream 34579 93833515 ~ 93835840 (+)
G205722 NA non-coding downstream 57725 93856661 ~ 93925170 (+)
G205728 NA non-coding downstream 71926 93870862 ~ 93876863 (+)
G205748 NA non-coding downstream 100282 93899218 ~ 93899527 (+)
G206276 NA non-coding downstream 129380 93928316 ~ 93928704 (+)
G205482 NA other upstream 393848 93401617 ~ 93402234 (+)
G205404 NA other upstream 407532 93371393 ~ 93388550 (+)
LOC110499942 LOC106561637 other upstream 957955 92837196 ~ 92839440 (+)
G204593 NA other upstream 1113727 92681346 ~ 92682355 (+)
G204240 ckap5 other upstream 1636179 92157275 ~ 92159903 (+)
G205688 NA other downstream 11424 93810360 ~ 93812169 (+)
G206285 NA other downstream 141550 93940486 ~ 93941471 (+)
G206389 LOC106561642 other downstream 302043 94100979 ~ 94101872 (+)
LOC110500139 LOC106561672 other downstream 603655 94391364 ~ 94437682 (+)
G206850 NA other downstream 758233 94557169 ~ 94562224 (+)

Expression


Co-expression Network