G205706 (LOC106561641)


Basic Information

Item Value
gene id G205706
gene name LOC106561641
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 93833515 ~ 93835840 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU232810
TGTTATGATGTGCCACTGCTGCCTCTCAATCACAGCTCCACTCACATAGGCATGACTGATTAGCCTAGCCTAAGGGGCATCTCTAAAAAAGTCATTTCATCCTTCCTGTCAATGATAATGTGTTACGTAACAATGGGGACGGGGATCCCATCCAATCCCGTCCAATCCACTCCACTCACATCCAAACTGGACAGCGGCCTCTCTGCTGACCACAGTGCCGTAGTCGTTGGTGGCCTTACAGGTGTACTTCCCAACGTGTTTGTTCTTGATGGGGTTAGAGATGACCAGGTTGCCTCCCACCAAAGTGTAGTGGTTGTCTTCATCCTGGTCTATATTCCTGCTGTTTAATCTCGTGTATGTGGCAGGTGGGTTGGCTCGTGCTCGACAGCTCATGGTGATTTTGGCCTCAGGTGACTCCTCGGGGTAGATGGTGTCGACCGGCTGATCCTCAAACACCGGCCCGTAACCTGTAGCATCgtctgaggagagagacacacatcgTTAATGACTTAGCACCTAACGGTTTAGACAAACAGTACATGACATCATcgtaacacacacactggcacattACCTGTAGCAtcgtctgaggagagagagagagagagagagagagagagacagcgacagacagacagacagacagacagacagacagacagacagacagacagacagacagacag

Function

NR:

description
PREDICTED: contactin-1a-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU232810 True 686 lncRNA 0.53 2 93833515 93835840

Neighbor

gene id symbol gene type direction distance location
LOC118936881 NA coding upstream 111753 93716089 ~ 93721762 (+)
LOC118936880 NA coding upstream 209430 93623033 ~ 93624085 (+)
LOC110502396 LOC105018284 coding upstream 456610 93373307 ~ 93376905 (+)
LOC110499974 LOC106561627 coding upstream 497997 93270955 ~ 93335518 (+)
ric8a ric8a coding upstream 748630 93068836 ~ 93084885 (+)
LOC110500011 LOC106561648 coding downstream 309823 94145663 ~ 94149467 (+)
dnm1l LOC106561645 coding downstream 314591 94150431 ~ 94172796 (+)
LOC110500081 NA coding downstream 428169 94264009 ~ 94268751 (+)
zgc:136858 LOC106561644 coding downstream 434720 94270560 ~ 94300044 (+)
LOC110500101 LOC106561643 coding downstream 464329 94300169 ~ 94317655 (+)
G205684 NA non-coding upstream 35301 93796451 ~ 93798214 (+)
G205665 NA non-coding upstream 75986 93757319 ~ 93757529 (+)
G205650 NA non-coding upstream 107512 93725559 ~ 93726003 (+)
G205599 NA non-coding upstream 218776 93614493 ~ 93614739 (+)
G205594 NA non-coding upstream 230000 93603240 ~ 93603515 (+)
G205722 NA non-coding downstream 20821 93856661 ~ 93925170 (+)
G205728 NA non-coding downstream 35022 93870862 ~ 93876863 (+)
G205748 NA non-coding downstream 63378 93899218 ~ 93899527 (+)
G206276 NA non-coding downstream 92476 93928316 ~ 93928704 (+)
G206284 LOC106561640 non-coding downstream 98593 93934433 ~ 93940323 (+)
G205688 NA other upstream 21346 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 34579 93796082 ~ 93798936 (+)
G205482 NA other upstream 431281 93401617 ~ 93402234 (+)
G205404 NA other upstream 444965 93371393 ~ 93388550 (+)
LOC110499942 LOC106561637 other upstream 995388 92837196 ~ 92839440 (+)
G206285 NA other downstream 104646 93940486 ~ 93941471 (+)
G206389 LOC106561642 other downstream 265139 94100979 ~ 94101872 (+)
LOC110500139 LOC106561672 other downstream 566751 94391364 ~ 94437682 (+)
G206850 NA other downstream 721329 94557169 ~ 94562224 (+)
G206908 NA other downstream 795989 94631829 ~ 94632267 (+)

Expression


Co-expression Network