G206389 (LOC106561642)



Basic Information


Item Value
gene id G206389
gene name LOC106561642
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 94100979 ~ 94101872 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU233546
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGGAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC
>TU233547
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGGAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC
>TU233549
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGGAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC
>TU233551
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGGAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC
>TU233552
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGGAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC
>TU233553
cagacctctctctccccctccactccaaGTGTTGccagacccctctctctccaagtGCTGCCAGAGCATGCAAACAGTCACTGTCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGCAAATGGGTGCAGTAACACGTAAATGGGTGCAGTAAAAACACAACAGTAAACGTATTCTACCAATTTAAAATACACCGTCTACAACCACAGAGACTAACATATACAGTCTATTACTCTATGAATGGATTCAGTGTTAGGAGAGAGTCCAGTTTTAGGTGAAGTTAGTGTTGTGTGGTGGTGGAGCCTGGGACCTACTTCCCTACAGCTTGGAGTTGAAGATGGGAATTAGGTGAAGTTAGTGTTGTGTGGTGGGGGAGCCTGGGACCTACTCCCCTACAGCTTGGAGTTGAAGATGGGAATACCATTGTACATGTCATGTTTGAGCTTGGCCCACTCAGTCAGCCTCTGGACGGTGGTCTTGTCCCTGGTGAGTATCCGGGCAGCTTTCTGCAGCTTCTCCTGGTTCCGGTCCAGATAGCGCAGGCCCTCGGCCTGCAGCAGGTTCAGCTTCTCACCACGGCTCTCATCCAGGGCGATGTCCTCGTTTATATAAGGGTTGAAGCGGAAGTACGAGTCAGGTGGAAGGAGGGCATCGAGCATGATGTGGAC

Function


NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU233546 False 694 TUCP 0.35 2 94100979 94101872
TU233547 False 714 TUCP 0.50 2 94100979 94101872
TU233549 False 814 TUCP 0.50 2 94100979 94101872
TU233551 False 734 TUCP 0.50 2 94100979 94101872
TU233552 False 774 TUCP 0.50 2 94100979 94101872
TU233553 True 834 TUCP 0.50 2 94100979 94101872

Neighbor


gene id symbol gene type direction distance location
LOC118936881 NA coding upstream 379217 93716089 ~ 93721762 (+)
LOC118936880 NA coding upstream 476894 93623033 ~ 93624085 (+)
LOC110502396 LOC105018284 coding upstream 724074 93373307 ~ 93376905 (+)
LOC110499974 LOC106561627 coding upstream 765461 93270955 ~ 93335518 (+)
ric8a ric8a coding upstream 1016094 93068836 ~ 93084885 (+)
LOC110500011 LOC106561648 coding downstream 43791 94145663 ~ 94149467 (+)
dnm1l LOC106561645 coding downstream 48559 94150431 ~ 94172796 (+)
LOC110500081 NA coding downstream 162137 94264009 ~ 94268751 (+)
zgc:136858 LOC106561644 coding downstream 168688 94270560 ~ 94300044 (+)
LOC110500101 LOC106561643 coding downstream 198297 94300169 ~ 94317655 (+)
G206388 NA non-coding upstream 568 94098245 ~ 94100411 (+)
G206377 NA non-coding upstream 16780 94083754 ~ 94084199 (+)
G206325 NA non-coding upstream 110860 93989443 ~ 93990119 (+)
G206284 LOC106561640 non-coding upstream 160656 93934433 ~ 93940323 (+)
G206276 NA non-coding upstream 172275 93928316 ~ 93928704 (+)
G206418 NA non-coding downstream 41712 94143584 ~ 94143821 (+)
G206419 NA non-coding downstream 42587 94144459 ~ 94144932 (+)
G206421 NA non-coding downstream 55552 94157424 ~ 94158198 (+)
G206426 LOC106561647 non-coding downstream 72188 94174060 ~ 94177373 (+)
G206447 NA non-coding downstream 129232 94231104 ~ 94231961 (+)
G206285 NA other upstream 159508 93940486 ~ 93941471 (+)
G205688 NA other upstream 288810 93810360 ~ 93812169 (+)
G205683 LOC106573085 other upstream 302043 93796082 ~ 93798936 (+)
G205482 NA other upstream 698745 93401617 ~ 93402234 (+)
G205404 NA other upstream 712429 93371393 ~ 93388550 (+)
LOC110500139 LOC106561672 other downstream 300719 94391364 ~ 94437682 (+)
G206850 NA other downstream 455297 94557169 ~ 94562224 (+)
G206908 NA other downstream 529957 94631829 ~ 94632267 (+)
G206926 NA other downstream 604074 94705946 ~ 94706248 (+)
G208404 NA other downstream 2125921 96227793 ~ 96228463 (+)

Expression



Co-expression Network