Gene
RNA
| Item | Value |
|---|---|
| gene id | G206738 |
| gene name | LOC106561643 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048566.1 |
| NCBI id | CM023220.2 |
| chromosome length | 103806877 |
| location | 94308970 ~ 94309192 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| CCR4-NOT transcription complex subunit 4-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU234001 | True | 223 | lncRNA | 0.61 | 1 | 94308970 | 94309192 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110500075 | LOC106561651 | coding | downstream | 50137 | 94251418 ~ 94258833 (-) |
| LOC110500060 | tnni3 | coding | downstream | 65404 | 94232734 ~ 94243566 (-) |
| LOC110500065 | LOC106561650 | coding | downstream | 79425 | 94222366 ~ 94229545 (-) |
| LOC110500043 | LOC106561646 | coding | downstream | 87824 | 94184199 ~ 94221146 (-) |
| LOC110500013 | LOC106561647 | coding | downstream | 128528 | 94171881 ~ 94180442 (-) |
| LOC110500125 | LOC106561674 | coding | upstream | 39326 | 94348518 ~ 94359922 (-) |
| LOC110500132 | LOC106561675 | coding | upstream | 54823 | 94364015 ~ 94367194 (-) |
| LOC110500153 | LOC106561673 | coding | upstream | 103052 | 94412244 ~ 94417008 (-) |
| LOC110500221 | LOC106561669 | coding | upstream | 217356 | 94526548 ~ 94529608 (-) |
| asb13b | LOC106561665 | coding | upstream | 294852 | 94604044 ~ 94611792 (-) |
| G206737 | NA | non-coding | downstream | 463 | 94308154 ~ 94308507 (-) |
| G206725 | NA | non-coding | downstream | 17683 | 94284127 ~ 94291287 (-) |
| G206722 | NA | non-coding | downstream | 35514 | 94273132 ~ 94273456 (-) |
| G206674 | NA | non-coding | downstream | 164191 | 94144456 ~ 94144779 (-) |
| G206741 | NA | non-coding | upstream | 2696 | 94311888 ~ 94312170 (-) |
| G206745 | LOC106561643 | non-coding | upstream | 5148 | 94314340 ~ 94314585 (-) |
| G206743 | LOC106561643 | non-coding | upstream | 5874 | 94315066 ~ 94317648 (-) |
| G206748 | NA | non-coding | upstream | 12530 | 94321722 ~ 94322292 (-) |
| G206751 | NA | non-coding | upstream | 19909 | 94329101 ~ 94329351 (-) |
| G205192 | NA | other | downstream | 1346036 | 92962044 ~ 92962934 (-) |
| LOC110499897 | LOC106573100 | other | downstream | 1869369 | 92398054 ~ 92443838 (-) |
| G204024 | NA | other | downstream | 2520867 | 91787187 ~ 91788103 (-) |
| G203915 | rassf9 | other | downstream | 2717921 | 91589212 ~ 91591049 (-) |
| G202279 | NA | other | downstream | 3867545 | 90377557 ~ 90441425 (-) |
| G206742 | LOC106561643 | other | upstream | 3232 | 94312424 ~ 94312774 (-) |
| G206744 | LOC106561643 | other | upstream | 4198 | 94313390 ~ 94313918 (-) |
| G206750 | NA | other | upstream | 18718 | 94327910 ~ 94328183 (-) |
| G207244 | LOC100194703 | other | upstream | 307723 | 94616915 ~ 94617232 (-) |
| G207249 | NA | other | upstream | 320245 | 94629437 ~ 94629739 (-) |
